Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS04885	BPHYT_RS04890	BPHYT_RS04895	BPHYT_RS04900	BPHYT_RS04905
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.7	-2.3	-1.3	+0.3	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.7	-1.5	-1.4	-1.1	-0.2
nitrogen source	L-Glutamine (N)	-0.8	-2.6	-0.9	-0.7	+0.1
nitrogen source	L-Asparagine (N)	-1.1	-1.6	-0.9	-1.0	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-2.4	-1.9	+0.0	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-1.1	-1.2	-1.1	-0.6	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-3.5	-0.4	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.0	-1.5	-1.1	-0.4	-1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	-3.4	-0.4	+0.0	+0.5
nitrogen source	L-Isoleucine (N)	+0.3	-3.2	-0.0	-0.3	-0.7
nitrogen source	L-Glutamic (N)	+0.4	-1.5	-1.5	-0.8	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	-2.5	-1.5	+0.2	+0.1
phage	24hr PHYTO6 MOI 0.1	-3.0	-1.5	+0.0	+0.1	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-3.1	-0.8	+0.2	+0.2
supernatant control	Vogels_fungal_media 0.1X	-0.1	-1.8	-1.1	-0.8	+0.4
supernatant control	Vogels_fungal_media 0.1X	-0.7	-0.7	-1.2	-1.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.0	-3.0	-2.0	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-2.4	-0.9	+0.2	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-3.1	-0.8	+0.1	+0.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-1.8	-1.1	-0.9	+0.0	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.2	-0.3	-0.6	-0.4	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-2.5	-1.0	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-2.3	-1.3	+0.5	+0.3
phage	36hr PHYTO1 MOI 1	-0.7	-2.2	+0.7	-0.1	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-1.9	-1.3	+0.3	+0.8
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.6	-2.4	+0.0	-0.1	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.9	-3.1	-1.4	+1.0	-0.1
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+1.3	-3.5	+0.0	-0.4	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7	-1.1	-1.5	+0.3	+1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+2.0	-0.9	-1.4	+0.3	+0.2