Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS04615 and BPHYT_RS04620 are separated by 117 nucleotidesBPHYT_RS04620 and BPHYT_RS04625 are separated by 32 nucleotidesBPHYT_RS04625 and BPHYT_RS04630 overlap by 4 nucleotidesBPHYT_RS04630 and BPHYT_RS04635 are separated by 1 nucleotides BPHYT_RS04615: BPHYT_RS04615 - urease accessory protein UreD, at 1,068,876 to 1,069,757 _RS04615 BPHYT_RS04620: BPHYT_RS04620 - urea ABC transporter ATP-binding protein, at 1,069,875 to 1,070,567 _RS04620 BPHYT_RS04625: BPHYT_RS04625 - urea ABC transporter ATP-binding protein, at 1,070,600 to 1,071,466 _RS04625 BPHYT_RS04630: BPHYT_RS04630 - amino acid ABC transporter permease, at 1,071,463 to 1,072,647 _RS04630 BPHYT_RS04635: BPHYT_RS04635 - urea ABC transporter permease, at 1,072,649 to 1,074,220 _RS04635
Group Condition BPHYT_RS04615 BPHYT_RS04620 BPHYT_RS04625 BPHYT_RS04630 BPHYT_RS04635
phage 24hr PHYTO3 MOI 10 -0.2 -0.3 -1.8 -3.3 -0.1
phage 24hr PHYTO9 MOI 0.1 +0.1 -0.0 +0.1 -2.9 -0.3
phage 36hr PHYTO2 MOI 1 +0.2 -0.3 -0.5 -2.4 +0.0
phage 24hr PHYTO2 MOI 1 -0.7 +0.2 -0.8 -0.8 -0.6
phage 36hr PHYTO11 MOI 1 -0.6 -0.0 -1.1 -0.1 -0.7
phage 36hr PHYTO6 MOI 0.1 -0.0 +0.1 -0.9 -1.3 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 +0.0 -0.5 -1.5 -0.3
phage 36hr PHYTO11 MOI 0.1 +0.0 +0.1 -0.1 -2.0 -0.1
phage 24hr PHYTO6 MOI 1 +0.1 +0.3 +0.3 -2.1 -0.5
phage 24hr PHYTO6 MOI 0.1 +0.1 +0.3 -1.5 -0.9 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.6 -0.6 -0.6 -0.9 -0.4
phage 24hr PHYTO11 MOI 0.1 +0.3 +0.0 -1.4 -0.7 +0.1
motility outer cut, LB soft agar motility assay +0.0 +0.4 -0.9 -0.9 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 +0.6 -0.6 -1.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 +0.4 -1.7 -0.4 +0.6
phage 24hr PHYTO2 MOI 0.1 -0.2 +0.3 +0.7 -1.2 -0.2
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.3 +0.0 -0.9 +0.8 -0.2
phage 36hr PHYTO8 MOI 10 +0.5 +0.5 -0.7 -0.4 -0.4
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.3 -0.0 +0.7 -1.3 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.5 -0.3 +0.6 -1.0 -0.1
phage P. phyto PHYTO2 MOI 1 +0.0 -0.3 -1.0 +0.9 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 +0.2 +0.8 -0.6 +0.4
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.4 +0.4 +0.8 -1.4 -0.1
phage 24hr PHYTO4 MOI 10 +0.5 -0.2 -1.1 +1.0 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.4 -0.3 +0.6 -0.6 +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.3 -0.1 +1.0 -0.5 +0.4
phage 24hr PHYTO6 MOI 10 +0.5 +0.2 +0.8 -0.7 +0.3
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.2 +0.7 -0.2 +0.9 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.7 +0.6 -0.3 +0.6 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 +0.2 +1.6 -0.3 +0.3
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BPHYT_RS04620
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BPHYT_RS04635
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