Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS04590	BPHYT_RS04595	BPHYT_RS04600	BPHYT_RS04605	BPHYT_RS04610
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.2	-4.6	-0.1	+0.5	-0.3
phage	P. phyto PHYTO2 MOI 0.1	+0.0	-3.0	-0.1	+0.2	-0.4
nitrogen source	L-Isoleucine (N)	+0.0	-2.4	+0.3	+0.1	-1.3
phage	24hr PHYTO6 MOI 1	+0.2	-2.4	-0.1	-0.2	-0.3
phage	24hr PHYTO2 MOI 0.1	-0.0	-1.7	-0.1	-0.2	-0.4
phage	36hr PHYTO7 MOI 0.1	-0.5	-1.8	+0.0	+0.1	-0.2
phage	36hr PHYTO8 MOI 10	-0.1	-2.1	-0.3	+0.1	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.9	-0.1	+0.1	-1.0
nophagecontrol	24hr Phyto Lib only	+0.1	-1.7	-0.3	-0.1	-0.3
nitrogen source	L-Lysine (N)	+0.1	-2.1	-0.0	-0.1	-0.1
phage	24hr PHYTO1 MOI 1	+0.1	-1.9	-0.1	-0.2	-0.2
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.3	-1.5	-0.2	+0.2	-0.3
carbon source	D-Glucose (C)	-0.2	-1.2	+0.0	+0.1	-1.0
motility	outer cut, LB soft agar motility assay	-0.3	-0.9	+0.2	+0.2	-1.3
phage	P. phyto PHYTO2 MOI 1	+0.5	-3.5	+0.1	+0.1	+0.7
motility	outer cut, LB soft agar motility assay	-0.1	-1.4	+0.2	+0.0	-0.7
stress	Bacitracin 0.125 mg/ml	+0.4	-1.7	-0.3	-0.1	-0.3
phage	24hr PHYTO9 MOI 10	+0.3	-2.2	-0.0	-0.2	+0.4
carbon source	Phenylacetic 5 mM (C)	+0.1	-1.8	+0.0	+0.3	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	-1.8	+0.1	+0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-1.7	-0.1	+0.1	+0.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.4	-1.9	+0.1	+0.1	+0.5
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.3	-1.6	+0.5	+0.1	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.9	+0.4	+0.4	-0.7
phage	36hr PHYTO11 MOI 0.1	+0.6	-1.7	+0.0	+0.3	+0.5
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.1	+1.2	-0.2	+0.0	-0.9
carbon source	Sebacic (C)	-0.2	+1.6	-0.0	-0.0	-0.6
carbon source	Malonic (C)	-0.2	+1.5	+0.1	+0.2	-0.8
supernatant control	Vogels_fungal_media; pH 5.5	-0.7	+1.4	-0.0	+0.2	+0.4
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.1	+1.9	-0.3	+0.2	+0.3