Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS04525 and BPHYT_RS04530 are separated by 251 nucleotidesBPHYT_RS04530 and BPHYT_RS04535 are separated by 54 nucleotidesBPHYT_RS04535 and BPHYT_RS04540 are separated by 166 nucleotidesBPHYT_RS04540 and BPHYT_RS04545 are separated by 28 nucleotides BPHYT_RS04525: BPHYT_RS04525 - amino acid ABC transporter substrate-binding protein, at 1,044,264 to 1,045,067 _RS04525 BPHYT_RS04530: BPHYT_RS04530 - acyltransferase, at 1,045,319 to 1,046,404 _RS04530 BPHYT_RS04535: BPHYT_RS04535 - hypothetical protein, at 1,046,459 to 1,048,156 _RS04535 BPHYT_RS04540: BPHYT_RS04540 - type VI secretion protein VasK, at 1,048,323 to 1,052,312 _RS04540 BPHYT_RS04545: BPHYT_RS04545 - membrane protein, at 1,052,341 to 1,053,585 _RS04545
Group Condition BPHYT_RS04525 BPHYT_RS04530 BPHYT_RS04535 BPHYT_RS04540 BPHYT_RS04545
phage 24hr PHYTO6 MOI 10 -0.2 -0.5 +0.2 -0.3 -0.6
phage 24hr PHYTO2 MOI 1 -0.3 -0.3 +0.2 -0.2 -0.6
phage 24hr PHYTO4 MOI 10 -0.0 -0.4 +0.2 -0.4 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.4 -0.2 +0.3 +0.1 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 -0.4 -0.3 +0.2 -0.6
phage 36hr PHYTO1 MOI 1 +0.2 -0.3 +0.4 -0.3 -0.6
phage 36hr PHYTO11 MOI 1 -0.2 -0.3 +0.4 +0.2 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.0 -0.1 -0.1 +0.5 +0.3
phage 24hr PHYTO4 MOI 0.1 +0.1 +0.0 +0.4 +0.1 -1.0
nophagecontrol 24hr Phyto Lib Only +0.2 -0.3 +0.4 -0.4 -0.3
phage 24hr PHYTO6 MOI 1 +0.5 -0.3 +0.4 -0.2 -0.6
phage 24hr PHYTO3 MOI 0.1 +0.5 -0.3 +0.4 -0.2 -0.7
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.7 -0.0 +0.0 -0.1 -0.7
phage PHYTO3 MOI 0.1 +0.3 +0.1 -0.1 +0.3 -0.7
phage 36hr PHYTO7 MOI 1 +0.3 -0.1 +0.5 -0.4 -0.3
phage 24hr PHYTO6 MOI 0.1 +0.3 +0.2 +0.3 -0.2 -0.5
phage P. phyto corn MOI 1 +0.6 -0.1 +0.5 -0.3 -0.6
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.1 +0.5 -0.1 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 -0.3 -0.3 +0.2 +0.2
phage 24hr PHYTO9 MOI 0.1 +0.5 -0.4 +0.4 -0.2 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.3 -0.1 +0.4 +0.3 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.5 -0.2 +0.5 +0.1 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -0.1 +0.1 +0.6 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.5 -0.4 -0.2 -0.0 -0.4
temperature LB, 37C -0.5 +0.3 +0.2 +0.4 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.5 -0.1 +0.5 +0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 +0.1 -0.0 +0.5 -0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.4 +0.2 +0.4 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.4 -0.2 +0.5 +0.4 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.9 +0.2 +0.3 +0.0 -0.1
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