Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS04390 and BPHYT_RS04395 are separated by 267 nucleotidesBPHYT_RS04395 and BPHYT_RS04400 are separated by 725 nucleotidesBPHYT_RS04400 and BPHYT_RS04405 are separated by 1463 nucleotidesBPHYT_RS04405 and BPHYT_RS04410 overlap by 38 nucleotides BPHYT_RS04390: BPHYT_RS04390 - glycosyl transferase, at 1,011,565 to 1,012,665 _RS04390 BPHYT_RS04395: BPHYT_RS04395 - methyl-accepting chemotaxis protein, at 1,012,933 to 1,014,480 _RS04395 BPHYT_RS04400: BPHYT_RS04400 - Crp/Fnr family transcriptional regulator, at 1,015,206 to 1,015,937 _RS04400 BPHYT_RS04405: BPHYT_RS04405 - glycosyl transferase family 1, at 1,017,401 to 1,018,549 _RS04405 BPHYT_RS04410: BPHYT_RS04410 - heptose 1-phosphate adenyltransferase, at 1,018,512 to 1,019,468 _RS04410
Group Condition BPHYT_RS04390 BPHYT_RS04395 BPHYT_RS04400 BPHYT_RS04405 BPHYT_RS04410
phage P. phyto PHYTO2 MOI 1 N.D. +0.4 -4.2 +0.6 N.D.
carbon source D-Glucose (C) N.D. -0.4 -1.1 -0.2 N.D.
vitamin With vitamins t1 N.D. -0.4 -1.3 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.1 -1.4 -0.2 N.D.
vitamin With vitamins t2 N.D. -0.2 -1.3 -0.0 N.D.
carbon source D-Fructose (C) N.D. -0.2 -1.0 -0.4 N.D.
carbon source D,L-Lactate (C) N.D. -0.1 -1.2 -0.2 N.D.
phage P. phyto PHYTO2 MOI 1 N.D. -0.4 -1.4 +0.3 N.D.
carbon source D-Fructose (C) N.D. +0.1 -1.5 -0.1 N.D.
phage 24hr PHYTO11 MOI 1 N.D. -0.4 -1.3 +0.3 N.D.
phage P. phyto corn MOI 0.1 N.D. -0.3 -1.0 +0.4 N.D.
carbon source L-Fucose (C) N.D. -0.1 -1.3 +0.5 N.D.
phage 36hr PHYTO10 MOI 1 N.D. -0.3 -1.2 +0.7 N.D.
carbon source Tween 20 (C) N.D. -0.3 -0.9 +0.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. +0.4 -0.9 +0.4 N.D.
nophagecontrol 24hr Phyto Lib Only N.D. -0.6 +0.5 +0.5 N.D.
phage 24hr PHYTO MOI 0.1 N.D. -0.5 +0.6 +0.5 N.D.
phage 36hr PHYTO4 MOI 1 N.D. -0.5 +0.7 +0.6 N.D.
carbon source Disodium Glutarate (C) N.D. -0.3 +1.3 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.4 +0.9 +0.6 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.8 +1.3 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.0 +1.3 -0.2 N.D.
supernatant control Vogels_fungal_media 0.1X N.D. +0.3 +1.1 -0.2 N.D.
phage 24hr PHYTO2 MOI 0.1 N.D. -0.3 +1.1 +0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.2 +1.5 +0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB N.D. -0.2 +1.9 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.1 +1.2 +0.8 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. +0.8 +1.2 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.2 +1.5 +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.0 +1.9 +0.2 N.D.
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