Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS04385 and BPHYT_RS04390 are separated by 61 nucleotidesBPHYT_RS04390 and BPHYT_RS04395 are separated by 267 nucleotidesBPHYT_RS04395 and BPHYT_RS04400 are separated by 725 nucleotidesBPHYT_RS04400 and BPHYT_RS04405 are separated by 1463 nucleotides BPHYT_RS04385: BPHYT_RS04385 - nucleoside-diphosphate sugar oxidoreductase, at 1,009,626 to 1,011,503 _RS04385 BPHYT_RS04390: BPHYT_RS04390 - glycosyl transferase, at 1,011,565 to 1,012,665 _RS04390 BPHYT_RS04395: BPHYT_RS04395 - methyl-accepting chemotaxis protein, at 1,012,933 to 1,014,480 _RS04395 BPHYT_RS04400: BPHYT_RS04400 - Crp/Fnr family transcriptional regulator, at 1,015,206 to 1,015,937 _RS04400 BPHYT_RS04405: BPHYT_RS04405 - glycosyl transferase family 1, at 1,017,401 to 1,018,549 _RS04405
Group Condition BPHYT_RS04385 BPHYT_RS04390 BPHYT_RS04395 BPHYT_RS04400 BPHYT_RS04405
carbon source Tween 20 (C) -5.8 N.D. -0.3 -0.9 +0.6
carbon source L-Alanine (C) -5.4 N.D. -0.2 -0.2 -0.3
carbon source D-Fructose (C) -4.4 N.D. -0.2 -1.0 -0.4
carbon source D-Fructose (C) -3.7 N.D. +0.1 -1.5 -0.1
carbon source D-Gluconic Acid (C) -5.2 N.D. -0.1 +0.8 -0.4
carbon source D-Sorbitol (C) -5.3 N.D. +0.1 +0.0 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.6 N.D. -0.7 -0.3 -0.3
carbon source D-Xylose (C) -5.3 N.D. -0.3 +0.6 +0.4
carbon source D-Alanine (C) -4.4 N.D. -0.1 +0.4 -0.2
stress Bacitracin 0.25 mg/ml -4.0 N.D. -0.3 +0.3 -0.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -4.7 N.D. -0.3 +0.4 +0.3
carbon source Xylitol (C) -4.8 N.D. -0.4 +0.5 +0.4
carbon source L-Rhamnose (C) -4.0 N.D. -0.1 +0.0 -0.1
carbon source m-Inositol (C) -4.4 N.D. -0.1 +0.2 +0.1
carbon source Gly-Glu (C) -3.6 N.D. -0.1 -0.0 +0.1
carbon source D,L-Lactate (C) -2.1 N.D. -0.1 -1.2 -0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -2.8 N.D. -1.1 +0.0 +0.2
carbon source L-Fucose (C) -2.5 N.D. -0.1 -1.3 +0.5
carbon source NAG (C) -3.3 N.D. -0.1 +0.2 -0.1
stress Polymyxin B sulfate 0.0625 mg/ml -3.2 N.D. -0.2 +0.3 +0.1
carbon source L-Glutamine (C) -3.7 N.D. -0.0 +0.5 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.6 N.D. -0.1 +0.8 +0.1
nitrogen source L-Glutamic (N) -3.3 N.D. +0.2 +0.7 -0.2
carbon source L-Arabinose (C) -3.2 N.D. -0.2 +0.8 +0.1
motility outer cut, LB soft agar motility assay -2.6 N.D. -0.1 +0.9 +0.2
phage P. phyto PHYTO2 MOI 1 +2.3 N.D. +0.4 -4.2 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 N.D. -0.8 +1.3 +0.6
phage P. phyto PHYTO2 MOI 1 +2.2 N.D. -0.4 -1.4 +0.3
phage 24hr PHYTO6 MOI 10 +3.1 N.D. -0.3 -0.4 +0.1
phage 24hr PHYTO4 MOI 10 +2.6 N.D. -0.2 +0.4 +0.6
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