Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS04180	BPHYT_RS04185	BPHYT_RS04190	BPHYT_RS04195	BPHYT_RS04200
phage	24hr PHYTO3 MOI 10	-0.2	-0.4	-0.3	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.1	-0.2	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	+0.1	-0.3	N.D.	N.D.
phage	36hr PHYTO11 MOI 0.1	-0.4	-0.2	+0.1	N.D.	N.D.
phage	24hr PHYTO6 MOI 10	-0.6	-0.1	+0.4	N.D.	N.D.
nitrogen source	NAG (N)	-0.5	+0.1	+0.1	N.D.	N.D.
supernatant control	Vogels_fungal_media; pH 5.5	+0.3	-0.0	-0.4	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	+0.2	+0.2	N.D.	N.D.
phage	24hr PHYTO6 MOI 0.1	-0.4	+0.1	+0.2	N.D.	N.D.
phage	P. phyto PHYTO2 MOI 1	+0.2	+0.2	-0.4	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.1	-0.3	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	-0.1	-0.3	N.D.	N.D.
nitrogen source	Putrescine (N)	-0.3	+0.1	+0.4	N.D.	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.3	+0.2	-0.2	N.D.	N.D.
phage	36hr PHYTO8 MOI 10	-0.2	+0.0	+0.5	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	-0.2	+0.2	N.D.	N.D.
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.3	+0.2	-0.2	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	+0.2	+0.3	N.D.	N.D.
supernatant control	Vogels_fungal_media 0.1X	+0.5	+0.2	-0.1	N.D.	N.D.
carbon source	L-Malic (C)	+0.3	-0.0	+0.4	N.D.	N.D.
stress	Thallium(I) acetate 0.01 mg/ml	+0.4	+0.1	+0.2	N.D.	N.D.
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.4	+0.2	+0.1	N.D.	N.D.
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.2	+0.1	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+0.1	+0.4	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.2	-0.1	N.D.	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.3	+0.2	+0.3	N.D.	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.2	+0.2	N.D.	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.8	+0.1	-0.0	N.D.	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.2	+0.1	N.D.	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.3	+0.4	+0.3	N.D.	N.D.