Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS04165	BPHYT_RS04170	BPHYT_RS04175	BPHYT_RS04180	BPHYT_RS04185
nitrogen source	L-Lysine (N)	-0.8	-0.5	-0.3	-0.2	+0.0
phage	36hr PHYTO11 MOI 0.1	-0.1	-0.8	-0.2	-0.4	-0.2
nophagecontrol	36hr Phyto Lib only	-0.9	-0.4	+0.2	-0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	-0.7	-0.1	-0.1	+0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.2	-0.6	-0.3	+0.5	+0.0
phage	24hr PHYTO9 MOI 0.1	-1.0	+0.3	+0.2	+0.0	-0.2
carbon source	D-Glucose 20 mM (C)	+0.4	-0.9	-0.2	+0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	-0.9	+0.5	+0.0	+0.3
carbon source	Malonic (C)	+0.4	-0.7	-0.4	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.5	+0.2	-0.6	-0.1
phage	24hr PHYTO11 MOI 1	+0.5	-0.4	-0.4	+0.3	-0.0
phage	36hr PHYTO1 MOI 10	+0.4	-0.9	+0.3	+0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.4	-0.1	+0.5	-0.1
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.6	-0.1	-0.6	-0.0	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	+0.8	-0.5	-0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	+0.9	-0.0	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.7	-0.7	+0.4	-0.2	+0.1
phage	24hr PHYTO10 MOI 10	-0.4	+0.7	+0.4	-0.1	-0.0
phage	24hr PHYTO6 MOI 1	-0.3	+0.8	+0.4	-0.2	-0.0
supernatant control	Vogels_fungal_media; pH 5.5	-0.3	+0.9	-0.1	+0.3	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.9	+0.0	-0.5	+0.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.1	+1.5	-0.1	-0.2	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.9	-0.2	+0.1	+0.3	+0.2
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.8	+0.3	+0.4	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.1	+1.0	-0.1	+0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.9	+0.4	-0.2	-0.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.7	-0.1	+0.5	+0.1
vitamin	With vitamins t1	+0.4	+1.0	+0.0	+0.2	+0.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.7	-0.0	+0.8	+0.1
vitamin	No vitamins t2	+0.4	+0.8	-0.0	+0.3	+0.2