Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS04080 and BPHYT_RS04085 are separated by 6 nucleotidesBPHYT_RS04085 and BPHYT_RS04090 are separated by 89 nucleotidesBPHYT_RS04090 and BPHYT_RS04095 are separated by 560 nucleotidesBPHYT_RS04095 and BPHYT_RS04100 are separated by 277 nucleotides BPHYT_RS04080: BPHYT_RS04080 - chloride channel protein, at 930,398 to 932,188 _RS04080 BPHYT_RS04085: BPHYT_RS04085 - MarR family transcriptional regulator, at 932,195 to 932,608 _RS04085 BPHYT_RS04090: BPHYT_RS04090 - CBS domain containing membrane protein, at 932,698 to 933,813 _RS04090 BPHYT_RS04095: BPHYT_RS04095 - SAM-dependent methyltransferase PhcB, at 934,374 to 935,192 _RS04095 BPHYT_RS04100: BPHYT_RS04100 - AraC family transcriptional regulator, at 935,470 to 936,000 _RS04100
Group Condition BPHYT_RS04080 BPHYT_RS04085 BPHYT_RS04090 BPHYT_RS04095 BPHYT_RS04100
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -4.4 N.D. -0.0 -0.6 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -4.2 N.D. -0.1 -0.7 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -2.8 N.D. +0.2 -1.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 N.D. -0.3 -3.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -3.7 N.D. -0.2 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -3.6 N.D. -0.6 +0.8 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -2.3 N.D. -0.2 -1.0 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -2.8 N.D. -0.0 -0.6 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -3.4 N.D. +0.0 +0.0 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -2.4 N.D. -0.0 -0.8 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.3 N.D. -0.1 -2.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 N.D. -0.0 -3.2 N.D.
nitrogen source L-Glutamine (N) -0.2 N.D. -0.6 -2.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.0 N.D. -0.1 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -2.5 N.D. -0.5 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 N.D. +0.2 -2.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.6 N.D. -0.1 +0.2 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -2.4 N.D. +0.5 -0.5 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.5 N.D. -0.1 +0.3 N.D.
phage 24hr PHYTO8 MOI 1 -0.5 N.D. +0.4 -2.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.0 N.D. +0.1 +0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 N.D. -0.3 -2.5 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -2.7 N.D. -0.3 +1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 N.D. +0.4 -2.5 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.3 N.D. -0.7 +1.0 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.1 N.D. +0.5 -2.5 N.D.
nitrogen source L-Glutamic (N) -0.0 N.D. +0.7 -2.5 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -2.5 N.D. +0.5 +0.2 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.4 N.D. +0.3 +0.9 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.3 N.D. +0.4 +2.3 N.D.
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