Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS04035	BPHYT_RS04040	BPHYT_RS04045	BPHYT_RS04050	BPHYT_RS04055
nitrogen source	L-Lysine (N)	-0.5	-0.0	-0.4	-0.6	-1.2
nophagecontrol	36hr Phyto Lib only	+0.5	-0.4	-0.5	-0.6	-0.6
phage	36hr PHYTO2 MOI 1	+0.4	-1.1	-0.0	-0.1	-0.3
nitrogen source	L-Serine (N)	-0.3	-0.5	+0.6	-0.5	-0.4
phage	36hr PHYTO1 MOI 10	+0.5	-1.0	+0.2	-0.3	-0.6
phage	24hr PHYTO7 MOI 1	+0.5	-0.7	+0.1	-0.4	-0.6
phage	24hr PHYTO3 MOI 10	+0.5	-1.1	-0.1	+0.1	-0.5
phage	24hr PHYTO11 MOI 0.1	+0.7	-0.3	-0.2	-0.6	-0.6
phage	24hr PHYTO MOI 0.1	+0.6	-1.0	-0.3	+0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.1	+0.9	-0.4	-0.5
phage	36hr PHYTO4 MOI 1	+0.8	-0.7	+0.1	-0.6	+0.2
nophagecontrol	36hr Phyto Lib Only	+0.7	-0.8	+0.3	-0.1	-0.4
phage	36hr PHYTO9 MOI 0.1	+0.5	-0.8	+0.1	+0.4	-0.5
stress	Paraquat dichloride 0.064 mg/ml	+0.8	-0.4	+0.3	-0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-0.8	+0.6	-0.5	+0.7
phage	24hr PHYTO3 MOI 1	+0.9	-0.6	+0.3	+0.2	-0.6
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.8	-0.2	+0.4	+0.3	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.9	+0.0	+0.4	+0.5	+0.5
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.5	-0.6	+0.7	+0.8	+0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.8	-0.4	-0.1	+0.7	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+0.5	+0.3	-0.3	+1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.1	+1.2	+0.4	-0.2	+0.2
carbon source	L-Arabinose (C)	+0.9	+0.4	+0.0	+0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	+0.0	+1.3	+0.8	+0.4
nitrogen source	L-Isoleucine (N)	+0.5	+0.6	+0.3	+0.6	+1.3
carbon source	Tween 20 (C)	+0.9	+0.9	+0.6	+0.5	+0.8
carbon source	L-Fucose (C)	+1.1	+0.9	+0.6	+0.9	+0.9
carbon source	D-Xylose (C)	+1.1	+1.0	+1.0	+1.1	+1.4
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+1.5	+1.2	+0.8	+1.3	+1.8
carbon source	Xylitol (C)	+1.7	+1.0	+1.7	+1.5	+1.5