Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS03995	BPHYT_RS04000	BPHYT_RS04005	BPHYT_RS04010	BPHYT_RS04015
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.8	-0.2	-0.6	-3.7	-1.1
phage	P. phyto PHYTO2 MOI 1	-0.3	-0.8	-1.9	-0.5	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	-0.7	-0.8	-1.4	-0.1
phage	24hr PHYTO3 MOI 10	-0.6	+0.0	+0.4	-1.7	-1.7
phage	36hr PHYTO6 MOI 10	-0.3	-0.1	-0.1	-2.7	-0.1
phage	PHYTO3 MOI 0.1	-0.9	-0.3	-1.0	-1.7	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.3	-0.1	-2.3	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	-0.5	-0.4	-1.4	+0.6
phage	24hr PHYTO2 MOI 0.1	+0.5	-0.1	-0.3	-3.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	+0.2	-1.2	+0.6	-1.9
phage	36hr PHYTO2 MOI 1	-0.5	-0.3	-0.8	-1.3	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	-0.3	-0.4	-2.3	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.6	-0.3	-1.1	-1.1
carbon source	Protocatechuic Acid (C)	-0.5	-0.1	-2.1	+0.8	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7	+0.4	-0.2	-1.8	-0.6
supernatant control	Vogels_fungal_media 0.1X	+0.1	+0.4	+0.6	-1.0	-1.4
phage	36hr PHYTO1 MOI 1	+0.4	+0.1	+0.4	-3.0	+0.9
phage	36hr PHYTO2 MOI 1	-0.6	-0.2	+0.8	-1.5	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	-0.8	-0.0	-1.1	+2.0
phage	36hr PHYTO10 MOI 10	-0.8	+0.3	+0.2	-1.3	+1.0
phage	P. phyto corn MOI 1	-0.6	-0.8	-0.8	+1.2	+0.5
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.7	+0.2	+0.1	-1.3	+1.2
phage	36hr PHYTO6 MOI 0.1	+0.5	+0.2	+1.1	-1.5	+0.6
carbon source	Malonic (C)	-0.2	+0.1	+0.9	+1.6	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.2	-1.0	+1.8	+1.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.4	-0.5	-0.8	+3.6
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.7	+0.6	+1.2	+1.0	+0.8
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.3	+1.2	+3.5	+0.8	-0.0
carbon source	D-Xylose (C)	+0.8	+1.0	+1.3	+1.2	+1.0
carbon source	Xylitol (C)	+0.9	+1.5	+1.6	+1.2	+1.8