Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS03925	BPHYT_RS03930	BPHYT_RS03935	BPHYT_RS03940	BPHYT_RS03945
nophagecontrol	36hr Phyto Lib only	-0.8	-0.5	-0.0	-0.3	-1.4
phage	36hr PHYTO11 MOI 0.1	-0.6	-0.4	+0.2	-0.0	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.2	+0.4	-0.2	-1.6
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.9	+0.2	+0.1	+0.1	-1.2
phage	36hr PHYTO8 MOI 10	+0.5	-0.0	+0.2	-0.0	-2.1
carbon source	Tween 20 (C)	-0.9	+0.1	+0.2	+0.3	-0.9
phage	36hr PHYTO2 MOI 1	+0.4	+0.6	+0.4	-0.3	-2.2
phage	24hr PHYTO9 MOI 0.1	-0.4	-0.4	-1.0	-0.1	+0.9
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.4	+0.2	+0.8	-0.7
phage	36hr PHYTO9 MOI 1	+0.6	+0.3	+0.3	-0.1	-1.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-1.3	-0.4	-0.2	-0.1	+1.4
phage	24hr PHYTO7 MOI 10	-0.5	-0.5	-0.3	-0.1	+0.8
phage	24hr PHYTO6 MOI 0.1	+0.6	-0.8	-0.3	-0.4	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.1	-0.2	-0.3	+0.1	-1.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.3	+0.8	-0.4	+0.2	-0.7
phage	36hr PHYTO7 MOI 1	+0.5	+0.4	+0.0	-0.4	-0.8
nitrogen source	NAG (N)	-1.0	-0.3	+0.4	+0.1	+0.7
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.4	-0.1	+0.3	+0.3	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	+0.3	+0.2	-0.5	+0.8
carbon source	Malonic (C)	+0.7	+0.4	-0.5	-0.3	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.6	+0.2	+0.7	-0.3	+0.8
phage	24hr PHYTO2 MOI 0.1	+0.7	+0.6	+0.2	-0.3	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	+0.4	-0.6	-0.1	+0.7
nitrogen source	Putrescine (N)	-0.2	+0.6	+0.2	-0.3	+0.9
supernatant control	Vogels_fungal_media; pH 5.5	-0.0	-0.4	+0.7	+0.6	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.1	-0.2	+0.5	+0.2	+1.4
motility	outer cut, LB soft agar motility assay	+0.9	+0.5	-0.0	+0.1	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+1.7	+0.4	+0.0	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.2	+0.7	+0.4	+0.1	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.2	+0.5	+0.3	+0.4	+1.4