Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS03895	BPHYT_RS03900	BPHYT_RS03905	BPHYT_RS03910	BPHYT_RS03915
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.1	-2.9	+0.0	+0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	-2.6	-0.4	+0.2	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	-1.9	+0.2	-0.3	-0.3
supernatant control	Vogels_fungal_media; pH 5.5	+0.3	-1.0	+0.5	-0.8	-0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-1.6	+0.6	-0.5	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-1.2	-0.6	+0.5	-0.1
phage	24hr PHYTO6 MOI 0.1	+0.1	-1.2	-0.4	+0.2	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4	-1.5	+0.1	+0.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-1.2	+0.4	+0.2	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-0.9	+0.3	-0.3	-0.5
phage	36hr PHYTO11 MOI 0.1	+0.4	-1.0	+0.3	+0.3	-0.6
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-1.0	+0.5	-0.3	+0.3	-0.1
carbon source	Phenylacetic 5 mM (C)	-0.4	-0.6	-0.4	+0.5	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	-1.6	+0.9	-0.1	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.3	+1.3	+0.4	-1.2	+0.1
r2a control	R2A control	+0.5	-0.7	+0.3	-0.3	+0.6
phage	24hr PHYTO3 MOI 10	+0.7	-1.0	+0.1	+0.9	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-0.5	+1.0	+0.5	-0.0
vitamin	No vitamins t2	-0.4	+1.6	+0.1	-0.4	-0.1
motility	inner cut, LB soft agar motility assay	-0.1	+1.3	+0.3	-0.2	-0.5
phage	24hr PHYTO3 MOI 1	-0.1	+0.7	-0.6	+0.6	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.3	+1.1	-0.9	+0.6	+0.2
carbon source	Azelaic (C)	-0.3	+0.6	+0.6	+0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.6	+0.7	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.1	-0.0	+0.1	+0.1	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+2.4	-0.6	+0.3	+0.1
nitrogen source	L-Isoleucine (N)	-0.1	+1.3	+0.5	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	+0.1	+1.3	-0.1	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+1.9	+0.6	-0.1	-0.0
carbon source	Protocatechuic Acid (C)	+0.3	+1.3	+0.3	+0.5	+0.2