Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS03860	BPHYT_RS03865	BPHYT_RS03870	BPHYT_RS03875	BPHYT_RS03880
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.4	-1.1	-1.2	-1.2	-1.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.5	-1.1	-1.0	-0.3	-0.9
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.0	-0.1	-0.1	-3.3	-0.1
phage	36hr PHYTO9 MOI 1	+0.1	-0.1	-0.2	-2.6	-0.2
phage	24hr PHYTO3 MOI 10	+0.1	-0.0	-0.1	-1.9	-0.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.3	-1.0	-0.5	-0.1	-0.5
phage	36hr PHYTO1 MOI 10	-0.2	-0.1	+0.1	-1.9	-0.3
carbon source	D-Glucose (C)	-0.2	+0.2	-0.1	-2.1	-0.1
phage	36hr PHYTO8 MOI 10	+0.3	-0.0	+0.1	-1.7	-0.5
motility	outer cut, LB soft agar motility assay	-0.3	-0.0	+0.1	-1.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.3	+0.0	-1.8	-0.3
phage	36hr PHYTO4 MOI 1	+0.4	+0.1	-0.1	-1.0	-0.7
phage	24hr PHYTO3 MOI 10	+0.2	+0.1	+0.1	-1.4	-0.3
phage	36hr PHYTO6 MOI 10	+0.3	+0.1	-0.1	-1.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.5	-0.1	-0.7	-0.3
vitamin	No vitamins t2	-0.3	+0.4	+0.1	-1.2	-0.1
nitrogen source	L-Serine (N)	+0.1	+0.0	+0.2	-1.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.3	+0.3	-0.8	-0.5
phage	24hr PHYTO10 MOI 10	+0.3	+0.3	-0.0	-1.0	-0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.3	+0.4	-1.2	+0.1
carbon source	Suberic (C)	+0.5	-0.4	+0.2	-0.5	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	-0.0	+0.4	-1.0	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	+0.5	+0.2	-0.8	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	+0.4	+0.1	-0.4	+0.5
phage	36hr PHYTO4 MOI 1	+0.2	+0.1	+0.1	+1.1	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	-0.1	+0.1	+1.0	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.2	+0.4	+0.0	+0.8	+0.4
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.7	-0.1	+0.0	+1.2	+0.0
carbon source	Phenylacetic 5 mM (C)	+0.2	+0.2	+0.3	+1.0	+0.3
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.7	+0.9	+0.7	+1.8	+2.4