Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS03715	BPHYT_RS03720	BPHYT_RS03725	BPHYT_RS03730	BPHYT_RS03735
vitamin	With vitamins t1	+0.1	-0.2	-3.8	-2.7	+0.1
lb	LB	+0.1	-0.2	-4.6	-1.5	-0.0
nitrogen source	Ammonium chloride (N)	-0.2	-0.0	-4.1	-1.0	-0.5
nitrogen source	L-Lysine (N)	+0.2	-0.3	-4.1	-0.6	-0.4
nitrogen source	L-Serine (N)	-0.2	+0.1	-4.1	-0.4	-0.5
vitamin	No vitamins t2	+0.1	-0.2	-3.7	-1.0	-0.3
carbon source	L-Fucose (C)	-0.2	+0.0	-4.3	-0.7	-0.0
vitamin	No vitamins t1	+0.1	-0.4	-3.8	-0.9	-0.0
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.8	+0.1	-3.5	-1.0	+0.1
nitrogen source	L-Phenylalanine (N)	-0.3	+0.1	-4.0	-0.6	-0.2
nitrogen source	L-Alanine (N)	+0.0	+0.2	-4.0	-1.2	+0.0
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.6	+0.2	-0.7	-4.9	+0.0
vitamin	With vitamins t2	+0.1	+0.1	-3.6	-1.3	+0.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.1	+1.0	-3.0	-2.7	+0.1
nitrogen source	L-Asparagine (N)	-0.2	+0.4	-4.1	-0.5	-0.1
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.1	+0.5	-3.8	-0.8	-0.1
nitrogen source	L-Citrulline (N)	+0.1	+0.4	-4.0	-0.4	-0.3
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.1	-0.2	-1.7	-2.8	+0.3
nitrogen source	Uridine (N)	-0.1	+0.4	-4.0	-0.6	+0.1
motility	outer cut, LB soft agar motility assay	-0.1	+0.2	-4.2	-0.3	+0.3
carbon source	Trisodium citrate (C)	+0.1	+0.5	-3.5	-1.3	+0.1
carbon source	Xylitol (C)	+0.3	+0.3	-3.4	-0.9	+0.3
nitrogen source	L-Glutamic (N)	+0.0	+0.6	-4.0	+0.4	-0.1
carbon source	L-Histidine (C)	+0.1	-0.0	-4.2	+0.9	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.2	+0.5	-3.8	-0.6	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	+0.8	-3.5	-0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.5	+0.3	-3.4	+0.0	-0.2
carbon source	L-Glutamine (C)	-0.2	-0.0	-3.3	+1.7	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	+1.0	-3.4	+0.3	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.2	+0.6	-3.3	+2.4	-1.1