Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS03685 and BPHYT_RS03690 are separated by 19 nucleotidesBPHYT_RS03690 and BPHYT_RS03695 are separated by 33 nucleotidesBPHYT_RS03695 and BPHYT_RS03700 are separated by 140 nucleotidesBPHYT_RS03700 and BPHYT_RS03705 overlap by 4 nucleotides BPHYT_RS03685: BPHYT_RS03685 - Tol system periplasmic component YbgF, at 838,390 to 839,139 _RS03685 BPHYT_RS03690: BPHYT_RS03690 - membrane protein, at 839,159 to 839,668 _RS03690 BPHYT_RS03695: BPHYT_RS03695 - protein TolB, at 839,702 to 840,994 _RS03695 BPHYT_RS03700: BPHYT_RS03700 - cell envelope biogenesis protein TonB, at 841,135 to 842,169 _RS03700 BPHYT_RS03705: BPHYT_RS03705 - biopolymer transporter ExbD, at 842,166 to 842,612 _RS03705
Group Condition BPHYT_RS03685 BPHYT_RS03690 BPHYT_RS03695 BPHYT_RS03700 BPHYT_RS03705
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.2 N.D. N.D. N.D. N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -2.9 N.D. N.D. N.D. N.D.
phage 36hr PHYTO8 MOI 10 -2.6 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.4 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.1 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.0 N.D. N.D. N.D. N.D.
motility outer cut, LB soft agar motility assay -1.9 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.8 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.8 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -1.8 N.D. N.D. N.D. N.D.
phage 24hr PHYTO9 MOI 10 -1.7 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.6 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.5 N.D. N.D. N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.4 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.4 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.4 N.D. N.D. N.D. N.D.
phage 24hr PHYTO MOI 0.1 -1.4 N.D. N.D. N.D. N.D.
motility inner cut, LB soft agar motility assay -1.3 N.D. N.D. N.D. N.D.
phage 24hr PHYTO4 MOI 0.1 -1.3 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -1.3 N.D. N.D. N.D. N.D.
phage 36hr PHYTO10 MOI 10 -1.3 N.D. N.D. N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 -1.3 N.D. N.D. N.D. N.D.
phage 36hr PHYTO8 MOI 10 -1.3 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.3 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.4 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +2.6 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +2.6 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +2.7 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +3.0 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +3.6 N.D. N.D. N.D. N.D.
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