Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS03660	BPHYT_RS03665	BPHYT_RS03670	BPHYT_RS03675	BPHYT_RS03680
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.7	-0.3	-0.3	N.D.
nitrogen source	L-Lysine (N)	-0.7	-0.0	-0.2	-0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.6	-0.2	-0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0	+0.0	-0.1	+0.5	N.D.
nitrogen source	D-Alanine (N)	-0.6	-0.4	+0.1	+0.1	N.D.
nitrogen source	Carnitine Hydrochloride (N)	-0.4	-0.5	+0.1	+0.2	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.9	+0.6	-0.1	-0.3	N.D.
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	+0.5	-1.0	-0.0	-0.0	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-1.1	+0.8	+0.0	-0.2	N.D.
motility	inner cut, LB soft agar motility assay	-0.6	+0.5	-0.1	+0.0	N.D.
phage	24hr PHYTO2 MOI 0.1	-0.6	+0.5	-0.1	+0.1	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.9	-0.4	-0.2	-0.3	N.D.
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.4	+0.3	-0.3	-0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	+0.6	-0.2	+0.2	N.D.
phage	36hr PHYTO10 MOI 10	+0.5	+0.3	-0.2	-0.2	N.D.
nitrogen source	Putrescine (N)	-0.4	+0.4	+0.2	+0.3	N.D.
phage	24hr PHYTO4 MOI 10	+0.7	-0.3	-0.1	+0.1	N.D.
carbon source	Protocatechuic Acid (C)	+0.5	+0.3	-0.2	-0.2	N.D.
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.5	-0.3	+0.2	+0.2	N.D.
nophagecontrol	36hr Phyto Lib only	+0.4	+0.5	-0.0	-0.2	N.D.
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	+0.6	+0.3	+0.2	-0.2	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.2	+1.2	-0.1	+0.0	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	-0.2	+0.2	+0.4	N.D.
phage	P. phyto corn MOI 0.1	+0.4	+0.7	+0.1	-0.1	N.D.
phage	24hr PHYTO7 MOI 10	-0.2	+1.2	-0.1	+0.2	N.D.
phage	24hr PHYTO8 MOI 1	+0.6	+0.8	-0.1	-0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	+0.6	-0.1	+0.0	N.D.
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.1	+1.2	+0.1	+0.1	N.D.
supernatant control	Vogels_fungal_media; pH 5.5	+1.0	+0.4	+0.0	+0.1	N.D.
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.4	+1.2	+0.4	-0.0	N.D.