Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS03645	BPHYT_RS03650	BPHYT_RS03655	BPHYT_RS03660	BPHYT_RS03665
phage	24hr PHYTO1 MOI 10	-4.0	+0.2	-2.4	-0.1	-0.3
phage	24hr PHYTO10 MOI 10	-3.7	+0.2	-2.2	+0.1	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-4.6	-0.4	-0.9	+0.1	-0.1
nitrogen source	Ammonium chloride (N)	-5.2	+0.2	-0.5	-0.3	+0.1
nitrogen source	NAG (N)	-4.9	+0.0	+0.2	-0.8	-0.2
phage	24hr PHYTO2 MOI 1	-2.9	+0.2	-2.5	-0.1	-0.3
phage	24hr PHYTO10 MOI 10	-3.8	+0.6	-2.3	-0.0	-0.2
motility	outer cut, LB soft agar motility assay	-2.1	-0.3	-2.8	-0.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-3.1	-0.2	-1.6	-0.4	-0.1
phage	36hr PHYTO10 MOI 10	-3.4	+0.5	-2.0	-0.2	-0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-3.0	+1.3	-3.5	-0.1	+0.2
nitrogen source	D-Alanine (N)	-2.0	+0.1	-2.1	-0.6	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-4.4	-0.2	-0.7	+0.3	+0.2
carbon source	L-Lactate (C)	-5.0	-0.1	-0.0	+0.1	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-3.3	+0.2	-2.3	+0.5	+0.2
carbon source	Sebacic (C)	-5.0	-0.0	+0.8	+0.1	-0.3
carbon source	D-Glucose (C)	-4.6	-0.1	-0.1	+0.2	+0.3
phage	36hr PHYTO1 MOI 10	-2.9	+0.2	-2.3	+0.7	+0.0
motility	inner cut, LB soft agar motility assay	-1.0	+0.4	-3.5	-0.6	+0.5
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-3.7	+0.5	-1.0	+0.4	-0.2
carbon source	D-Glucose 20 mM (C)	-5.0	-0.1	+1.0	-0.1	+0.2
carbon source	Protocatechuic Acid (C)	-4.0	-0.2	+0.8	-0.1	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-4.8	+0.1	+1.0	+0.2	-0.1
supernatant control	Vogels_fungal_media; pH 5.5	-4.8	-0.4	+0.4	+1.0	+0.4
vitamin	With vitamins t2	-4.2	+0.2	+1.2	-0.4	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-4.2	+0.1	+1.0	-0.3	+0.6
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-3.8	+0.1	+0.9	+0.5	+0.2
stress	Bacitracin 0.25 mg/ml	+1.5	+0.5	-3.4	+0.3	-0.0
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-3.5	+0.2	+0.8	+0.4	+1.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-3.4	+3.1	-1.1	+0.1	+0.5