Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS03640	BPHYT_RS03645	BPHYT_RS03650	BPHYT_RS03655	BPHYT_RS03660
nitrogen source	Ammonium chloride (N)	-5.3	-5.2	+0.2	-0.5	-0.3
nitrogen source	NAG (N)	-5.0	-4.9	+0.0	+0.2	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-4.6	-4.6	-0.4	-0.9	+0.1
carbon source	L-Lactate (C)	-5.1	-5.0	-0.1	-0.0	+0.1
nitrogen source	L-Lysine (N)	-5.2	-3.4	-0.0	-0.5	-0.7
nitrogen source	D-Alanine (N)	-5.2	-2.0	+0.1	-2.1	-0.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-4.5	-3.0	+1.3	-3.5	-0.1
nitrogen source	L-Asparagine (N)	-5.3	-4.1	+0.1	-0.3	-0.1
nitrogen source	L-Alanine (N)	-5.2	-2.7	+0.0	-1.8	+0.3
nitrogen source	L-Glutamic (N)	-5.2	-3.3	+0.0	+0.2	-0.8
nitrogen source	L-Proline (N)	-5.3	-3.4	-0.3	+0.1	-0.1
carbon source	Sebacic (C)	-4.8	-5.0	-0.0	+0.8	+0.1
nutrient	L-Histidine	-5.4	-3.1	+0.0	-0.5	+0.5
nitrogen source	L-Glutamine (N)	-5.2	-2.9	+0.1	-0.3	-0.1
carbon source	D-Glucose (C)	-3.7	-4.6	-0.1	-0.1	+0.2
carbon source	D-Mannose (C)	-4.9	-3.7	-0.1	+0.4	+0.1
carbon source	D-Glucose 20 mM (C)	-3.9	-5.0	-0.1	+1.0	-0.1
motility	inner cut, LB soft agar motility assay	-3.2	-1.0	+0.4	-3.5	-0.6
carbon source	L-Proline (C)	-4.8	-3.7	-0.0	+0.7	-0.0
carbon source	Protocatechuic Acid (C)	-4.1	-4.0	-0.2	+0.8	-0.1
carbon source	D-Galacturonic Acid (C)	-5.0	-2.8	-0.1	+0.8	-0.3
carbon source	D-Fructose (C)	-5.0	-2.6	-0.2	+0.5	+0.2
supernatant control	Vogels_fungal_media; pH 5.5	-3.3	-4.8	-0.4	+0.4	+1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-3.2	-4.8	+0.1	+1.0	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-4.3	-2.2	-0.6	-0.6	+0.9
vitamin	With vitamins t2	-3.3	-4.2	+0.2	+1.2	-0.4
carbon source	L-Tryptophan (C)	-5.1	-2.2	-0.3	+0.9	+0.4
carbon source	NAG (C)	-4.7	-2.2	-0.0	+1.4	+0.2
stress	Bacitracin 0.25 mg/ml	-3.6	+1.5	+0.5	-3.4	+0.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-2.1	-3.4	+3.1	-1.1	+0.1