Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS03565 and BPHYT_RS03570 are separated by 330 nucleotidesBPHYT_RS03570 and BPHYT_RS03575 are separated by 185 nucleotidesBPHYT_RS03575 and BPHYT_RS03580 are separated by 8 nucleotidesBPHYT_RS03580 and BPHYT_RS03585 are separated by 523 nucleotides BPHYT_RS03565: BPHYT_RS03565 - NAD kinase, at 809,324 to 810,226 _RS03565 BPHYT_RS03570: BPHYT_RS03570 - heat-inducible transcription repressor HrcA, at 810,557 to 811,576 _RS03570 BPHYT_RS03575: BPHYT_RS03575 - ferrochelatase, at 811,762 to 812,832 _RS03575 BPHYT_RS03580: BPHYT_RS03580 - RNA-binding protein S4, at 812,841 to 813,248 _RS03580 BPHYT_RS03585: BPHYT_RS03585 - protein GrpE, at 813,772 to 814,356 _RS03585
Group Condition BPHYT_RS03565 BPHYT_RS03570 BPHYT_RS03575 BPHYT_RS03580 BPHYT_RS03585
carbon source Protocatechuic Acid (C) N.D. -3.6 N.D. -0.7 N.D.
carbon source NAG (C) N.D. -2.4 N.D. -0.7 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. -3.2 N.D. +0.2 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -2.1 N.D. -0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -1.5 N.D. -1.4 N.D.
carbon source L-Glutamine (C) N.D. -2.4 N.D. -0.5 N.D.
nitrogen source L-Isoleucine (N) N.D. -2.2 N.D. -0.6 N.D.
carbon source Trisodium citrate (C) N.D. -3.1 N.D. +0.4 N.D.
carbon source L-Fucose (C) N.D. -2.9 N.D. +0.2 N.D.
carbon source Xylitol (C) N.D. -3.1 N.D. +0.4 N.D.
nitrogen source NAG (N) N.D. -1.5 N.D. -1.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.7 N.D. -0.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -1.3 N.D. -1.2 N.D.
supernatant control Vogels_fungal_media; pH 5.5 N.D. -2.3 N.D. -0.3 N.D.
carbon source D-Xylose (C) N.D. -3.1 N.D. +0.5 N.D.
carbon source Protocatechuic Acid (C) N.D. -2.8 N.D. +0.2 N.D.
carbon source Malonic (C) N.D. -1.7 N.D. -0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.4 N.D. -1.0 N.D.
phage 24hr PHYTO2 MOI 1 N.D. -1.7 N.D. -0.8 N.D.
carbon source Gly-Glu (C) N.D. -2.2 N.D. -0.3 N.D.
carbon source Phenylacetic 5 mM (C) N.D. -1.8 N.D. -0.6 N.D.
carbon source 2-Deoxy-D-Ribose (C) N.D. -2.2 N.D. -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -2.3 N.D. +0.0 N.D.
carbon source L-Asparagine (C) N.D. -2.2 N.D. +0.3 N.D.
carbon source Sebacic (C) N.D. -2.3 N.D. +0.3 N.D.
carbon source 2-Deoxy-D-Ribose (C) N.D. -2.4 N.D. +0.5 N.D.
carbon source Putrescine (C) N.D. -2.1 N.D. +0.2 N.D.
carbon source pyruvate (C) N.D. -2.1 N.D. +0.2 N.D.
carbon source L-Arabinose (C) N.D. -2.1 N.D. +0.4 N.D.
nitrogen source L-Alanine (N) N.D. -2.1 N.D. +0.5 N.D.
remove
BPHYT_RS03565
plot		 remove
BPHYT_RS03570
plot		 remove
BPHYT_RS03575		 remove
BPHYT_RS03580
plot		 remove
BPHYT_RS03585
plot