Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS03555 and BPHYT_RS03560 are separated by 289 nucleotidesBPHYT_RS03560 and BPHYT_RS03565 are separated by 71 nucleotidesBPHYT_RS03565 and BPHYT_RS03570 are separated by 330 nucleotidesBPHYT_RS03570 and BPHYT_RS03575 are separated by 185 nucleotides BPHYT_RS03555: BPHYT_RS03555 - glutamine-synthetase adenylyltransferase, at 804,500 to 807,292 _RS03555 BPHYT_RS03560: BPHYT_RS03560 - DNA repair protein, at 807,582 to 809,252 _RS03560 BPHYT_RS03565: BPHYT_RS03565 - NAD kinase, at 809,324 to 810,226 _RS03565 BPHYT_RS03570: BPHYT_RS03570 - heat-inducible transcription repressor HrcA, at 810,557 to 811,576 _RS03570 BPHYT_RS03575: BPHYT_RS03575 - ferrochelatase, at 811,762 to 812,832 _RS03575
Group Condition BPHYT_RS03555 BPHYT_RS03560 BPHYT_RS03565 BPHYT_RS03570 BPHYT_RS03575
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.9 -0.7 N.D. -3.2 N.D.
carbon source Protocatechuic Acid (C) -0.1 -0.5 N.D. -3.6 N.D.
carbon source Trisodium citrate (C) -0.4 +0.0 N.D. -3.1 N.D.
carbon source Xylitol (C) -0.2 -0.3 N.D. -3.1 N.D.
carbon source D-Xylose (C) -0.2 +0.0 N.D. -3.1 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -1.4 -0.1 N.D. -1.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -0.2 N.D. -1.9 N.D.
carbon source L-Fucose (C) -0.2 +0.1 N.D. -2.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 +0.0 N.D. -2.3 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -1.2 +0.0 N.D. -1.6 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.0 N.D. -2.1 N.D.
carbon source Putrescine (C) -0.7 -0.0 N.D. -2.1 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -1.0 -0.2 N.D. -1.5 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -1.4 -0.2 N.D. -1.1 N.D.
carbon source 2-Deoxy-D-Ribose (C) -0.3 -0.0 N.D. -2.4 N.D.
carbon source L-Glutamine (C) -0.4 +0.1 N.D. -2.4 N.D.
carbon source Azelaic (C) -0.4 -0.2 N.D. -2.0 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -0.0 N.D. -1.9 N.D.
carbon source Protocatechuic Acid (C) -0.0 +0.3 N.D. -2.8 N.D.
nitrogen source L-Alanine (N) -0.5 +0.1 N.D. -2.1 N.D.
carbon source Sebacic (C) +0.2 -0.2 N.D. -2.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 +0.3 N.D. -1.8 N.D.
stress Lomefloxacin 0.001 mM -0.1 -2.2 N.D. +0.3 N.D.
supernatant control Vogels_fungal_media; pH 5.5 +0.1 +0.2 N.D. -2.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 +0.5 N.D. -1.6 N.D.
carbon source 2-Deoxy-D-Ribose (C) -0.2 +0.5 N.D. -2.2 N.D.
carbon source L-Arabinose (C) +0.1 +0.5 N.D. -2.1 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +3.5 -0.2 N.D. -0.4 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +3.4 -0.3 N.D. -0.1 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +4.0 +0.3 N.D. -1.2 N.D.
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