Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS03390	BPHYT_RS03395	BPHYT_RS03400	BPHYT_RS03405	BPHYT_RS03410
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.5	-0.2	-2.9	-1.4	-4.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.2	-0.3	-2.3	-0.5	-3.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.0	-1.2	-0.4	-3.8
phage	36hr PHYTO7 MOI 0.1	-0.7	-0.0	-0.1	-0.0	-4.3
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.8	-0.2	-2.2	-1.6	-2.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+0.3	-2.1	-0.3	-2.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.2	-1.6	-1.7	-1.2
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.4	+0.2	-3.2	-0.3	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.2	-0.5	-0.6	-3.5
motility	outer cut, LB soft agar motility assay	+0.2	-0.5	-3.2	-0.2	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.0	-1.8	-1.3	-1.4
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.6	+0.4	-2.0	-0.7	-1.4
phage	24hr PHYTO6 MOI 10	+0.0	-0.2	+0.4	-0.8	-3.7
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.1	-0.4	-1.6	-0.6	-1.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.1	-0.3	-3.0	+0.2	-0.8
pH	LB, pH7	-0.2	-0.1	-3.5	+0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.3	-1.4	-1.5	-1.0
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.3	+0.3	-3.1	-0.1	-0.7
motility	outer cut, LB soft agar motility assay	+0.4	-0.2	-3.2	+0.1	-1.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.1	-2.0	-0.8	-1.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.4	+0.2	-1.0	-1.1	-2.1
phage	24hr PHYTO4 MOI 10	-0.6	-0.0	+0.9	-0.9	-2.9
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.1	-0.0	-1.9	+0.5	-1.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.5	-0.3	-1.6	-1.4	-0.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.5	-1.7	-1.2	-1.2
supernatant control	Vogels_fungal_media 0.1X	-0.4	+0.1	-3.1	-0.4	+0.9
phage	24hr PHYTO9 MOI 0.1	+0.1	-0.0	+0.6	+0.5	-4.0
motility	inner cut, LB soft agar motility assay	-0.2	-0.1	-3.1	+1.5	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.1	+0.9	-0.6	-2.5
phage	24hr PHYTO8 MOI 1	-0.3	+0.2	+2.0	+0.6	-2.4