Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS03385	BPHYT_RS03390	BPHYT_RS03395	BPHYT_RS03400	BPHYT_RS03405
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.7	-0.1	-0.3	-3.0	+0.2
pH	LB, pH7	-0.4	-0.2	-0.1	-3.5	+0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.1	+0.5	-0.2	-2.9	-1.4
supernatant control	Vogels_fungal_media 0.1X	+0.1	-0.4	+0.1	-3.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.3	-0.2	-0.3	-2.3	-0.5
motility	outer cut, LB soft agar motility assay	+0.2	+0.2	-0.5	-3.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.0	-0.1	-0.5	-2.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	+0.5	-0.1	-1.9	-1.5
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.4	-0.4	+0.2	-3.2	-0.3
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.0	-0.3	+0.3	-3.1	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.2	+0.5	-0.3	-1.6	-1.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.3	-0.1	-0.2	-1.5	-1.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.4	+0.6	+0.0	-2.4	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.1	-0.2	-1.6	-1.7
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.4	+0.8	-0.2	-2.2	-1.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.1	-0.3	-1.4	-1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.7	-0.4	-0.1	-2.1	-0.7
motility	outer cut, LB soft agar motility assay	+0.3	+0.4	-0.2	-3.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.1	+0.0	-1.8	-1.3
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.5	-0.6	+0.4	-2.0	-0.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.0	+0.2	+0.5	-1.7	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.3	+0.0	-2.2	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	+0.3	+0.2	-2.0	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	+0.1	+0.3	-2.0	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	+0.3	+0.1	-1.4	-1.5
motility	inner cut, LB soft agar motility assay	+0.3	-0.2	-0.1	-3.1	+1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.9	+0.7	+0.1	-2.9	-0.0
carbon source	D-Glucosamine Hydrochloride (C)	-0.0	+0.2	-0.0	-2.3	+1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.2	+0.5	+0.5	-2.6	+0.0
phage	24hr PHYTO8 MOI 1	+0.3	-0.3	+0.2	+2.0	+0.6