Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS03320	BPHYT_RS03325	BPHYT_RS03330	BPHYT_RS03335	BPHYT_RS03340
phage	36hr PHYTO4 MOI 1	-0.8	-0.0	-1.8	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.2	-1.7	N.D.	N.D.
supernatant control	Vogels_fungal_media; pH 5.5	-1.1	-0.1	-1.0	N.D.	N.D.
phage	36hr PHYTO2 MOI 0.1	-1.0	-0.6	-0.5	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.3	-1.6	N.D.	N.D.
phage	24hr PHYTO6 MOI 1	-0.4	-0.8	-0.7	N.D.	N.D.
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-1.8	-0.2	+0.1	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	-1.7	+0.1	N.D.	N.D.
phage	24hr PHYTO3 MOI 1	-0.7	-0.4	-0.7	N.D.	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.7	-0.5	-1.7	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.8	-1.4	N.D.	N.D.
nitrogen source	L-Lysine (N)	+0.3	+0.3	-1.8	N.D.	N.D.
motility	outer cut, LB soft agar motility assay	-0.8	+0.4	-0.7	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.2	+0.4	-0.2	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+0.5	-0.9	N.D.	N.D.
phage	36hr PHYTO2 MOI 1	+0.6	+0.1	-1.6	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	+0.5	-0.9	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.7	+0.8	+0.1	N.D.	N.D.
phage	36hr PHYTO8 MOI 0.1	+0.6	-0.6	-0.9	N.D.	N.D.
carbon source	2-Deoxy-D-Ribose (C)	+0.6	-0.3	-1.1	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.1	+1.1	-0.6	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.8	-0.7	N.D.	N.D.
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-1.4	-0.2	+1.2	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-1.1	+0.4	N.D.	N.D.
phage	24hr PHYTO6 MOI 10	+0.5	+0.9	-1.5	N.D.	N.D.
phage	P. phyto PHYTO2 MOI 1	+1.3	-0.4	+0.2	N.D.	N.D.
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.6	-0.4	+0.9	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	+2.0	-0.3	N.D.	N.D.
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.5	-0.3	+2.2	N.D.	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.5	+1.7	N.D.	N.D.