Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS03210	BPHYT_RS03215	BPHYT_RS03220	BPHYT_RS03225	BPHYT_RS03230
carbon source	Tween 20 (C)	+0.2	-0.1	-2.7	-1.4	-0.8
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.3	-3.2	-0.1	-0.3	-0.3
phage	P. phyto PHYTO2 MOI 1	-0.4	-1.4	-0.2	-0.5	-0.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.2	-2.3	-0.4	-0.1	+0.0
carbon source	Trisodium citrate (C)	+0.0	-0.6	-1.1	-0.2	-0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.0	-2.3	+0.3	+0.3	-0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.1	-2.0	-0.3	-0.0	+0.2
carbon source	D-Glucose (C)	+0.1	-1.7	-0.2	-0.1	+0.3
carbon source	propionate (C)	-0.1	-1.8	-0.1	+0.0	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	-1.3	-0.3	-0.3	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.4	-1.2	+0.0	-0.1	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.5	-1.5	+0.0	-0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-2.0	+0.0	-0.1	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.1	-1.7	+0.2	+0.1	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.3	-1.9	+0.1	+0.1	+0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.0	-1.4	+0.2	+0.3	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.0	-1.5	+0.5	+0.5	-0.2
carbon source	L-Glutamine (C)	+1.2	-1.7	-0.0	-0.1	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-1.3	+0.3	+0.0	+0.2
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.4	-1.1	+0.8	+0.3	+0.0
phage	36hr PHYTO6 MOI 10	-0.2	-1.1	+0.3	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	+0.3	-1.3	+0.4	+0.2	+0.2
stress	Bacitracin 0.25 mg/ml	+0.2	-1.0	+0.3	+0.5	+0.3
phage	36hr PHYTO2 MOI 1	-0.3	-0.7	+0.3	+0.6	+0.4
carbon source	Sebacic (C)	-0.3	+2.0	+0.1	-0.1	-0.2
carbon source	Dodecandioic (C)	+0.1	+1.6	+0.3	+0.1	-0.0
carbon source	Sebacic (C)	-0.1	+2.2	+0.4	-0.1	+0.0
stress	Paraquat dichloride 0.064 mg/ml	+0.0	+1.6	+1.4	+0.2	+0.2
carbon source	Suberic (C)	-0.3	+6.5	+0.3	-0.1	-0.1
carbon source	Suberic (C)	-0.1	+6.2	+0.2	+0.1	-0.0