Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS03125 and BPHYT_RS03130 are separated by 74 nucleotidesBPHYT_RS03130 and BPHYT_RS03135 are separated by 74 nucleotidesBPHYT_RS03135 and BPHYT_RS03140 overlap by 4 nucleotidesBPHYT_RS03140 and BPHYT_RS03145 are separated by 23 nucleotides BPHYT_RS03125: BPHYT_RS03125 - D-aminoacylase, at 699,193 to 700,674 _RS03125 BPHYT_RS03130: BPHYT_RS03130 - hypothetical protein, at 700,749 to 701,135 _RS03130 BPHYT_RS03135: BPHYT_RS03135 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 701,210 to 702,034 _RS03135 BPHYT_RS03140: BPHYT_RS03140 - 5'-nucleotidase, at 702,031 to 702,933 _RS03140 BPHYT_RS03145: BPHYT_RS03145 - threonine dehydratase, at 702,957 to 704,480 _RS03145
Group Condition BPHYT_RS03125 BPHYT_RS03130 BPHYT_RS03135 BPHYT_RS03140 BPHYT_RS03145
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 -0.3 -5.8 -0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 -0.7 -4.2 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -0.6 -3.2 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.6 -3.1 -0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 -0.4 -3.5 -0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -0.9 -2.5 -0.5 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.0 -0.9 -2.4 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -0.5 -2.6 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.9 -2.4 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 -0.4 -2.9 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -0.5 -2.2 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.4 -2.2 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days +0.2 -0.1 -3.1 +0.3 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.3 +0.5 -3.3 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.3 -2.1 -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -0.9 -1.0 -0.3 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.0 -1.8 -0.1 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.3 -0.7 -1.1 +0.0 N.D.
carbon source Phenylacetic 5 mM (C) -0.4 -0.6 -0.9 -0.0 N.D.
phage P. phyto PHYTO2 MOI 1 -0.1 -1.7 -0.3 +0.0 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 -0.9 -1.6 +0.2 N.D.
phage 36hr PHYTO10 MOI 10 +0.1 -0.6 -1.3 -0.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 -0.2 -1.6 -0.3 N.D.
stress Nickel (II) chloride 1 mM +0.0 -0.2 -1.4 -0.4 N.D.
r2a control R2A control -0.1 +0.1 -0.2 -1.7 N.D.
carbon source Suberic (C) +0.2 -0.3 -1.3 -0.1 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.2 -2.4 +0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 -0.0 -1.5 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.2 -0.2 -1.8 +0.5 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.2 -1.3 +0.3 N.D.
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