Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS03055 and BPHYT_RS03060 are separated by 95 nucleotidesBPHYT_RS03060 and BPHYT_RS03065 are separated by 384 nucleotidesBPHYT_RS03065 and BPHYT_RS03070 are separated by 152 nucleotidesBPHYT_RS03070 and BPHYT_RS03075 are separated by 104 nucleotides BPHYT_RS03055: BPHYT_RS03055 - LysR family transcriptional regulator, at 681,210 to 682,097 _RS03055 BPHYT_RS03060: BPHYT_RS03060 - MFS transporter, at 682,193 to 683,512 _RS03060 BPHYT_RS03065: BPHYT_RS03065 - LuxR family transcriptional regulator, at 683,897 to 684,535 _RS03065 BPHYT_RS03070: BPHYT_RS03070 - LuxR family transcriptional regulator, at 684,688 to 685,392 _RS03070 BPHYT_RS03075: BPHYT_RS03075 - LuxR family transcriptional regulator, at 685,497 to 686,141 _RS03075
Group Condition BPHYT_RS03055 BPHYT_RS03060 BPHYT_RS03065 BPHYT_RS03070 BPHYT_RS03075
phage PHYTO3 MOI 0.1 +0.3 -0.1 -2.3 +0.2 -0.5
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.1 -0.1 -2.3 +0.3 -0.2
phage 24hr PHYTO2 MOI 1 -0.0 -0.2 -1.5 +0.1 -0.6
phage 24hr PHYTO3 MOI 10 -0.6 -0.3 -1.0 +0.2 -0.5
carbon source Suberic (C) -0.3 -0.2 -1.2 -0.0 -0.3
phage 24hr PHYTO6 MOI 0.1 -0.1 -0.6 -1.5 +0.5 -0.2
phage 36hr PHYTO2 MOI 1 -0.2 -0.2 -1.9 +0.5 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.2 -1.6 -0.1 -0.4
phage 36hr PHYTO2 MOI 0.1 -0.2 -0.2 -1.6 +0.6 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.3 -1.6 +0.1 -0.4
phage 36hr PHYTO8 MOI 10 -0.2 +0.1 -1.7 +0.5 -0.3
phage 36hr PHYTO4 MOI 1 +0.4 -0.5 -1.3 +0.1 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.5 -1.9 +0.3 -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.5 -1.5 +0.5 -0.8
nophagecontrol 24hr Phyto Lib Only -0.0 -0.0 -1.6 +0.5 -0.2
phage 36hr PHYTO1 MOI 1 -0.0 -0.5 -1.0 +0.5 -0.3
phage 36hr PHYTO11 MOI 1 -0.1 -0.2 -0.7 +0.5 -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.2 -1.3 +0.1 -0.3
phage 36hr PHYTO6 MOI 0.1 -0.1 -0.3 -0.8 +0.5 -0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 +0.1 -1.1 +0.4 -0.4
phage 24hr PHYTO1 MOI 10 -0.2 -0.5 -0.7 +0.6 -0.3
phage 36hr PHYTO6 MOI 10 -0.2 -0.3 -0.4 +0.5 -0.7
phage 24hr PHYTO4 MOI 0.1 -0.1 -0.4 -0.9 +0.7 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.4 -1.0 +0.4 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.4 -1.0 +0.5 -0.3
phage 24hr PHYTO3 MOI 10 -0.3 +0.1 -0.8 +1.0 -0.2
phage 36hr PHYTO2 MOI 1 +0.1 +0.1 -1.0 +1.0 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.7 -0.0 +0.9 +0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.2 +1.5 -0.5 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 -0.0 +1.2 +0.5 -0.1
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