Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS03040	BPHYT_RS03045	BPHYT_RS03050	BPHYT_RS03055	BPHYT_RS03060
phage	24hr PHYTO3 MOI 10	N.D.	-0.5	+0.1	-0.6	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	-0.4	-0.0	-0.7	-0.0
phage	24hr PHYTO11 MOI 0.1	N.D.	-0.3	-0.1	-0.2	-0.5
phage	24hr PHYTO6 MOI 0.1	N.D.	-0.2	+0.3	-0.1	-0.6
phage	36hr PHYTO10 MOI 10	N.D.	-0.3	+0.3	-0.2	-0.3
phage	P. phyto PHYTO2 MOI 1	N.D.	-0.2	+0.6	-0.4	-0.1
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	N.D.	-0.1	+0.5	-0.4	+0.1
motility	outer cut, LB soft agar motility assay	N.D.	+0.1	+0.3	+0.4	-0.5
carbon source	L-Fucose (C)	N.D.	-0.1	+0.4	+0.5	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.1	+0.2	+0.5	-0.4
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	+0.2	+0.4	-0.3	+0.1
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	+0.6	+0.4	-0.3	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.1	+0.5	+0.3	-0.1
carbon source	Malonic (C)	N.D.	-0.1	+0.4	-0.1	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.1	+0.9	-0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.3	-0.3	+0.2	+0.5
phage	P. phyto corn MOI 1	N.D.	+0.1	+0.5	+0.3	-0.2
phage	36hr PHYTO1 MOI 1	N.D.	+0.2	+0.6	+0.1	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.1	+0.6	+0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.5	+0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.5	+0.5	+0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.0	+0.4	+0.5	+0.1
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	+0.5	+0.4	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.2	+0.5	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.1	+0.5	+0.5	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.2	+0.5	+0.5	+0.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	+0.2	+0.8	-0.0	+0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	+0.7	+0.2	+0.4
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	N.D.	+0.0	+0.2	+0.3	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.1	+0.7	+0.3	+0.4