Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS03000	BPHYT_RS03005	BPHYT_RS03010	BPHYT_RS03015	BPHYT_RS03020
phage	36hr PHYTO7 MOI 0.1	-0.1	+0.2	-0.1	-4.2	-0.1
supernatant control	Vogels_fungal_media 0.1X	-0.1	-0.2	+0.2	-4.0	+0.1
nitrogen source	L-Isoleucine (N)	+0.1	-0.1	-0.4	-3.2	-0.2
phage	24hr PHYTO3 MOI 10	-0.1	-0.0	-0.1	-2.8	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.1	-0.2	-0.3	-2.3	-0.1
carbon source	D-Glucose (C)	+0.0	+0.2	-0.0	-2.4	-0.2
carbon source	Sebacic (C)	+0.0	-0.0	-0.7	-1.6	+0.0
phage	24hr PHYTO9 MOI 10	+0.0	-0.1	+0.6	-2.2	-0.4
carbon source	D-Fructose (C)	+0.2	-0.1	+0.1	-2.0	-0.1
nitrogen source	Putrescine (N)	+0.3	-0.2	-0.2	-1.8	+0.1
carbon source	D-Xylose (C)	+0.2	+0.2	-0.4	-1.5	-0.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.3	-0.1	+0.1	-1.8	+0.1
carbon source	Azelaic (C)	-0.2	+0.3	-0.9	+0.6	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.3	-0.5	-0.7	+0.5
nitrogen source	L-Phenylalanine (N)	-0.1	-0.2	-0.5	+1.5	-0.2
phage	P. phyto PHYTO2 MOI 1	+0.1	-0.2	-0.2	+1.5	-0.6
carbon source	Malonic (C)	-0.3	+0.3	-0.6	+1.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.3	-0.7	+1.2	+0.8
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.5	+0.2	-0.2	+1.4	-0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+0.0	-0.9	+1.7	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.1	-0.1	+1.7	+0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.3	-0.6	+3.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.0	-0.2	+1.8	+0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.1	+0.4	+0.2	+1.6	-0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.0	-0.3	-0.3	+3.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.2	+0.1	+2.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.2	-0.2	+2.2	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.6	+0.2	+2.2	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.4	-0.0	+4.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.5	-0.4	+0.1	+3.6	+0.3