Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS02995	BPHYT_RS03000	BPHYT_RS03005	BPHYT_RS03010	BPHYT_RS03015
phage	36hr PHYTO7 MOI 0.1	-0.2	-0.1	+0.2	-0.1	-4.2
supernatant control	Vogels_fungal_media 0.1X	+0.2	-0.1	-0.2	+0.2	-4.0
nitrogen source	L-Isoleucine (N)	+0.3	+0.1	-0.1	-0.4	-3.2
phage	24hr PHYTO3 MOI 10	-0.0	-0.1	-0.0	-0.1	-2.8
carbon source	Sebacic (C)	-0.2	+0.0	-0.0	-0.7	-1.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.2	+0.1	-0.2	-0.3	-2.3
carbon source	D-Glucose (C)	-0.2	+0.0	+0.2	-0.0	-2.4
carbon source	D-Fructose (C)	-0.1	+0.2	-0.1	+0.1	-2.0
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.4	+0.2	+0.1	-0.2	-1.6
nitrogen source	Putrescine (N)	-0.0	+0.3	-0.2	-0.2	-1.8
phage	24hr PHYTO9 MOI 10	+0.1	+0.0	-0.1	+0.6	-2.2
carbon source	D-Xylose (C)	-0.0	+0.2	+0.2	-0.4	-1.5
phage	24hr PHYTO10 MOI 10	-0.7	+0.0	-0.0	-0.4	+1.3
carbon source	Malonic (C)	-0.4	-0.3	+0.3	-0.6	+1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	+0.2	+0.4	-0.5	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-0.2	-0.3	-0.7	+1.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	+0.4	+0.0	-0.9	+1.7
nitrogen source	L-Phenylalanine (N)	+0.3	-0.1	-0.2	-0.5	+1.5
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.3	-0.5	+0.2	-0.2	+1.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.4	+0.0	-0.2	+1.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	+0.1	+0.1	-0.4	+1.5
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.3	-0.1	+0.2	-0.1	+1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.2	-0.2	+0.1	+2.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.3	+0.2	-0.2	+2.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.4	+0.1	+0.4	+0.2	+1.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.7	-0.2	-0.3	-0.6	+3.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.3	+0.6	+0.2	+2.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+1.2	+0.0	-0.3	-0.3	+3.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+0.5	-0.4	+0.1	+3.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+1.1	+0.3	-0.4	-0.0	+4.1