Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS02990	BPHYT_RS02995	BPHYT_RS03000	BPHYT_RS03005	BPHYT_RS03010
supernatant control	Vogels_fungal_media 0.1X	-0.5	-0.1	-0.3	-0.1	-0.4
phage	24hr PHYTO3 MOI 0.1	-0.2	-0.3	-0.1	-0.4	-0.5
phage	24hr PHYTO6 MOI 0.1	-0.8	+0.1	-0.1	-0.2	-0.3
phage	24hr PHYTO9 MOI 0.1	-0.9	-0.3	+0.3	-0.2	-0.2
carbon source	Malonic (C)	-0.3	-0.4	-0.3	+0.3	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	+0.4	-0.2	-0.3	-0.7
phage	36hr PHYTO6 MOI 0.1	-0.5	-0.5	+0.3	+0.0	-0.4
phage	36hr PHYTO4 MOI 1	-0.3	-0.6	-0.1	-0.2	+0.2
phage	24hr PHYTO6 MOI 10	-0.5	-0.5	+0.2	-0.2	-0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.6	+0.4	+0.0	-0.9
phage	24hr PHYTO2 MOI 1	-0.4	-0.4	-0.3	+0.1	+0.2
carbon source	Disodium Glutarate (C)	+0.1	-0.5	-0.0	+0.3	-0.7
carbon source	Azelaic (C)	+0.3	-0.1	-0.2	+0.3	-0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.8	+0.2	+0.4	-0.5
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.6	+0.1	-0.3	-0.2	-0.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.7	-0.2	-0.3	-0.6
carbon source	Phenylacetic 5 mM (C)	+0.5	-0.6	-0.1	+0.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.9	-0.2	-0.8	-0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.2	+0.5	-0.1	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.6	+0.1	+0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+0.3	+0.5	-0.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.9	-0.0	+0.1	-0.3
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.5	-0.2	-0.0	-0.4	+0.5
carbon source	succinate (C)	+0.4	-0.3	+0.3	+0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.8	+0.0	+0.2	-0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.3	+1.2	+0.0	-0.3	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.3	+0.3	+0.6	+0.2
carbon source	Suberic (C)	+0.3	-0.2	+0.6	+0.2	+0.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.5	+1.1	+0.3	-0.4	-0.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.4	+0.6	-0.0	+0.3	+0.4