Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS02960	BPHYT_RS02965	BPHYT_RS02970	BPHYT_RS02975	BPHYT_RS02980
tn7 efficiency	Outgrowth after Tn7 transformation	+0.1	-5.5	+0.3	-1.2	N.D.
motility	outer cut, LB soft agar motility assay	-0.0	-4.2	+0.7	-2.7	N.D.
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.2	-2.2	-0.0	-3.3	N.D.
motility	inner cut, LB soft agar motility assay	+0.1	-3.6	+0.6	-2.4	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-2.4	+0.0	-2.8	N.D.
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.0	-3.7	+0.3	-1.3	N.D.
stress	Zinc 0.5 mM	-0.2	-3.7	-0.3	-0.4	N.D.
tn7 efficiency	Outgrowth after Tn7 transformation	-0.2	-3.5	+0.1	-1.0	N.D.
motility	outer cut, LB soft agar motility assay	-0.0	-3.9	+0.8	-1.4	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-1.5	-0.2	-2.9	N.D.
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	-0.3	-2.8	+0.2	-1.2	N.D.
motility	inner cut, LB soft agar motility assay	+0.0	-3.0	+0.6	-1.7	N.D.
stress	Chloride 200 mM	+0.0	-3.4	+0.0	-0.6	N.D.
carbon source	L-Arginine (C)	+0.0	-4.0	+0.2	-0.2	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-1.1	+0.1	-2.7	N.D.
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.1	-2.0	+0.3	-1.9	N.D.
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	+0.2	-2.4	+0.2	-1.6	N.D.
carbon source	propionate (C)	+0.3	-3.1	+0.3	-1.0	N.D.
motility	outer cut, LB soft agar motility assay	+0.4	-3.2	+0.7	-1.1	N.D.
nitrogen source	L-Lysine (N)	+0.2	-3.9	+0.0	+0.4	N.D.
motility	inner cut, LB soft agar motility assay	-0.2	-2.4	+0.7	-0.6	N.D.
stress	Benzethonium chloride 0.0016 mM	-0.1	-3.6	+0.9	+1.0	N.D.
pH	LB, pH4	+0.2	+1.1	+0.5	-2.5	N.D.
temperature	LB, 37C	-0.1	+1.5	+0.9	-2.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	+1.8	+0.4	-1.8	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+2.1	+0.8	-1.6	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+2.3	+0.6	-1.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+2.6	+0.9	-1.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+2.7	+1.2	-0.2	N.D.
phage	24hr PHYTO4 MOI 10	+0.1	+1.1	+0.6	+2.9	N.D.