Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS02925 and BPHYT_RS02930 overlap by 1 nucleotidesBPHYT_RS02930 and BPHYT_RS02935 are separated by 161 nucleotidesBPHYT_RS02935 and BPHYT_RS02940 are separated by 91 nucleotidesBPHYT_RS02940 and BPHYT_RS02945 are separated by 58 nucleotides BPHYT_RS02925: BPHYT_RS02925 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 650,170 to 650,730 _RS02925 BPHYT_RS02930: BPHYT_RS02930 - KpsF/GutQ family protein, at 650,730 to 651,713 _RS02930 BPHYT_RS02935: BPHYT_RS02935 - potassium transporter, at 651,875 to 653,878 _RS02935 BPHYT_RS02940: BPHYT_RS02940 - adenine phosphoribosyltransferase, at 653,970 to 654,536 _RS02940 BPHYT_RS02945: BPHYT_RS02945 - lysine transporter LysE, at 654,595 to 655,209 _RS02945
Group Condition BPHYT_RS02925 BPHYT_RS02930 BPHYT_RS02935 BPHYT_RS02940 BPHYT_RS02945
phage 24hr PHYTO3 MOI 10 N.D. -2.1 -0.6 -0.3 -0.0
phage PHYTO3 MOI 0.1 N.D. -2.3 -0.1 -0.3 +0.2
phage 24hr PHYTO2 MOI 0.1 N.D. -1.6 -0.3 -0.2 -0.2
phage 36hr PHYTO8 MOI 0.1 N.D. -0.7 -1.0 -0.2 -0.4
phage 24hr PHYTO6 MOI 10 N.D. -1.0 -0.5 -0.3 -0.4
phage 24hr PHYTO10 MOI 10 N.D. -0.7 -0.5 -0.4 -0.5
phage 36hr PHYTO2 MOI 1 N.D. -0.4 -0.7 -0.6 -0.3
phage 36hr PHYTO1 MOI 10 N.D. -1.3 -0.4 -0.2 -0.3
phage 36hr PHYTO7 MOI 1 N.D. +0.0 -0.7 -0.7 -0.7
phage 24hr PHYTO1 MOI 1 N.D. -1.4 -0.4 -0.2 +0.1
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -1.7 +0.4 +0.0 -0.2
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent N.D. -1.8 +0.3 +0.1 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -1.7 -0.1 +0.1 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -2.0 +0.1 +0.3 +0.4
lb_dap plate control LB_DAP agar plate, outgrowth in LB N.D. -0.9 +0.3 -0.5 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -1.0 -0.3 +0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -1.4 +0.3 +0.3 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -1.0 -0.4 +0.4 +0.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. -1.6 +0.8 +0.2 -0.0
phage 36hr PHYTO11 MOI 1 N.D. +0.8 -0.5 -0.5 -0.4
carbon source D-Glucose (C) N.D. -1.5 +0.4 +0.1 +0.4
phage 36hr PHYTO11 MOI 1 N.D. +0.8 -0.5 -0.4 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.2 +0.1 +0.1 +0.9
phage 24hr PHYTO2 MOI 0.1 N.D. +1.1 -0.4 -0.1 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.0 +1.1 -0.1 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.8 +0.7 +1.0 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.1 +0.5 +0.5 +1.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.0 +0.5 +5.0 +0.6
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.2 +0.5 +5.4 +0.8
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. +0.3 +0.3 +6.9 -0.0
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