Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS02890 and BPHYT_RS02895 are separated by 127 nucleotidesBPHYT_RS02895 and BPHYT_RS02900 are separated by 337 nucleotidesBPHYT_RS02900 and BPHYT_RS02905 are separated by 170 nucleotidesBPHYT_RS02905 and BPHYT_RS02910 are separated by 187 nucleotides BPHYT_RS02890: BPHYT_RS02890 - HPr kinase/phosphorylase, at 643,976 to 644,944 _RS02890 BPHYT_RS02895: BPHYT_RS02895 - PTS sugar transporter subunit IIA, at 645,072 to 645,527 _RS02895 BPHYT_RS02900: BPHYT_RS02900 - ribosome hibernation promoting factor, at 645,865 to 646,221 _RS02900 BPHYT_RS02905: BPHYT_RS02905 - RNA polymerase subunit sigma-54, at 646,392 to 647,903 _RS02905 BPHYT_RS02910: BPHYT_RS02910 - ABC transporter, at 648,091 to 648,876 _RS02910
Group Condition BPHYT_RS02890 BPHYT_RS02895 BPHYT_RS02900 BPHYT_RS02905 BPHYT_RS02910
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. N.D. -1.2 -5.8 N.D.
nitrogen source Uridine (N) N.D. N.D. +0.7 -6.5 N.D.
nitrogen source Carnitine Hydrochloride (N) N.D. N.D. +0.8 -6.4 N.D.
nitrogen source Putrescine (N) N.D. N.D. +0.1 -5.3 N.D.
nitrogen source D-Alanine (N) N.D. N.D. +0.4 -5.4 N.D.
nitrogen source L-Proline (N) N.D. N.D. +0.3 -5.2 N.D.
nitrogen source L-Serine (N) N.D. N.D. -0.7 -4.2 N.D.
nitrogen source NAG (N) N.D. N.D. +0.2 -4.9 N.D.
nitrogen source L-Lysine (N) N.D. N.D. +0.2 -4.8 N.D.
carbon source L-Malic (C) N.D. N.D. -0.3 -4.1 N.D.
nitrogen source L-Alanine (N) N.D. N.D. +0.8 -5.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days N.D. N.D. -0.5 -3.6 N.D.
carbon source succinate (C) N.D. N.D. +1.8 -5.8 N.D.
carbon source propionate (C) N.D. N.D. +0.1 -4.1 N.D.
vitamin With vitamins t2 N.D. N.D. +0.3 -4.2 N.D.
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. -1.2 -2.4 N.D.
nitrogen source L-Phenylalanine (N) N.D. N.D. -0.0 -3.6 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. N.D. -2.7 -0.7 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. -0.7 -2.7 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. -0.2 -3.0 N.D.
carbon source Tween 20 (C) N.D. N.D. +0.7 -3.9 N.D.
vitamin No vitamins t2 N.D. N.D. +0.7 -3.6 N.D.
nitrogen source Ammonium chloride (N) N.D. N.D. +0.5 -3.0 N.D.
carbon source L-Alanine (C) N.D. N.D. +0.3 -2.8 N.D.
nitrogen source L-Glutamic (N) N.D. N.D. +0.8 -2.4 N.D.
phage 36hr PHYTO6 MOI 10 N.D. N.D. -1.0 +2.2 N.D.
phage 24hr PHYTO1 MOI 10 N.D. N.D. +1.0 +2.1 N.D.
phage 36hr PHYTO3 MOI 1 N.D. N.D. +0.6 +2.5 N.D.
phage 36hr PHYTO2 MOI 1 N.D. N.D. +0.8 +2.3 N.D.
nophagecontrol 24hr Phyto Lib Only N.D. N.D. +0.8 +2.5 N.D.
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