Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS02885 and BPHYT_RS02890 are separated by 97 nucleotidesBPHYT_RS02890 and BPHYT_RS02895 are separated by 127 nucleotidesBPHYT_RS02895 and BPHYT_RS02900 are separated by 337 nucleotidesBPHYT_RS02900 and BPHYT_RS02905 are separated by 170 nucleotides BPHYT_RS02885: BPHYT_RS02885 - glmZ(sRNA)-inactivating NTPase, at 642,985 to 643,878 _RS02885 BPHYT_RS02890: BPHYT_RS02890 - HPr kinase/phosphorylase, at 643,976 to 644,944 _RS02890 BPHYT_RS02895: BPHYT_RS02895 - PTS sugar transporter subunit IIA, at 645,072 to 645,527 _RS02895 BPHYT_RS02900: BPHYT_RS02900 - ribosome hibernation promoting factor, at 645,865 to 646,221 _RS02900 BPHYT_RS02905: BPHYT_RS02905 - RNA polymerase subunit sigma-54, at 646,392 to 647,903 _RS02905
Group Condition BPHYT_RS02885 BPHYT_RS02890 BPHYT_RS02895 BPHYT_RS02900 BPHYT_RS02905
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -2.0 N.D. N.D. -1.2 -5.8
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -3.6 N.D. N.D. -2.7 -0.7
nitrogen source L-Lysine (N) -1.9 N.D. N.D. +0.2 -4.8
nitrogen source Uridine (N) -0.5 N.D. N.D. +0.7 -6.5
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -1.8 N.D. N.D. -0.5 -3.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -4.8 N.D. N.D. -0.1 -0.8
nitrogen source Carnitine Hydrochloride (N) -0.0 N.D. N.D. +0.8 -6.4
nitrogen source Putrescine (N) -0.2 N.D. N.D. +0.1 -5.3
nitrogen source NAG (N) -0.4 N.D. N.D. +0.2 -4.9
carbon source succinate (C) -0.9 N.D. N.D. +1.8 -5.8
nitrogen source D-Alanine (N) +0.1 N.D. N.D. +0.4 -5.4
nitrogen source L-Serine (N) +0.0 N.D. N.D. -0.7 -4.2
nitrogen source L-Proline (N) +0.1 N.D. N.D. +0.3 -5.2
nitrogen source L-Alanine (N) -0.2 N.D. N.D. +0.8 -5.1
vitamin With vitamins t2 -0.5 N.D. N.D. +0.3 -4.2
carbon source L-Malic (C) +0.1 N.D. N.D. -0.3 -4.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.8 N.D. N.D. -0.7 -2.7
supernatant control Vogels_fungal_media; pH 5.5 -0.5 N.D. N.D. -1.2 -2.4
carbon source Tween 20 (C) -0.9 N.D. N.D. +0.7 -3.9
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -2.6 N.D. N.D. -0.4 -1.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.8 N.D. N.D. -0.2 -3.0
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -2.4 N.D. N.D. -0.5 -1.0
carbon source propionate (C) +0.1 N.D. N.D. +0.1 -4.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.5 N.D. N.D. -0.3 -2.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.5 N.D. N.D. -1.2 -1.1
vitamin No vitamins t2 -0.4 N.D. N.D. +0.7 -3.6
nitrogen source Ammonium chloride (N) -0.3 N.D. N.D. +0.5 -3.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.6 N.D. N.D. -0.7 +1.4
phage 36hr PHYTO8 MOI 10 -2.0 N.D. N.D. -0.4 +1.6
phage 36hr PHYTO2 MOI 1 -1.5 N.D. N.D. +0.8 +2.3
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