Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS02785	BPHYT_RS02790	BPHYT_RS02795	BPHYT_RS02800	BPHYT_RS02805
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.0	+0.1	-3.7	-0.3	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.1	-0.2	-2.5	-0.3	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.1	-0.1	-2.7	+0.3	+0.1
phage	36hr PHYTO3 MOI 1	-1.1	-0.4	-0.4	+0.1	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	-1.0	-0.5	+0.2	-0.1
phage	24hr PHYTO10 MOI 10	-0.7	+0.1	-0.3	-0.6	+0.2
nophagecontrol	24hr Phyto Lib Only	-0.3	-0.6	-0.0	-0.5	+0.2
supernatant control	Vogels_fungal_media; pH 5.5	-0.7	+0.3	+0.0	-0.6	-0.3
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.4	-0.1	-0.8	+0.2	+0.3
phage	24hr PHYTO2 MOI 0.1	-1.1	+0.1	+0.1	-0.0	+0.2
nitrogen source	L-Isoleucine (N)	+0.0	-0.8	-0.3	+0.6	+0.1
phage	PHYTO3 MOI 0.1	-0.5	+0.4	+0.2	-0.2	-0.2
phage	36hr PHYTO2 MOI 1	-0.6	+0.3	+0.2	-0.2	+0.1
nophagecontrol	36hr Phyto Lib only	-0.4	-0.4	+0.1	+0.4	+0.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.2	-0.3	-0.7	+0.2	+0.7
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.8	+0.4	+0.2	+0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.5	-0.6	+0.1	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+0.6	-0.2	-0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	+0.3	-0.1	-0.3	+0.3
carbon source	D-Glucose (C)	-0.1	+0.5	-0.3	+0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.1	+0.3	+0.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	+0.2	+0.3	+0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	+0.8	-0.4	+0.4	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+0.4	+0.4	-0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.6	+0.4	+0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	+0.4	+0.3	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.5	+0.0	+0.4	+0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.9	+0.1	+0.3	+0.1	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.8	+0.4	-0.0	+0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	+1.0	+0.6	-0.0	+0.5