Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS02755 and BPHYT_RS02760 are separated by 28 nucleotidesBPHYT_RS02760 and BPHYT_RS02765 are separated by 35 nucleotidesBPHYT_RS02765 and BPHYT_RS02770 overlap by 11 nucleotidesBPHYT_RS02770 and BPHYT_RS02775 are separated by 338 nucleotides BPHYT_RS02755: BPHYT_RS02755 - cyd operon protein YbgT, at 619,744 to 619,857 _RS02755 BPHYT_RS02760: BPHYT_RS02760 - cytochrome BD oxidase subunit II, at 619,886 to 621,022 _RS02760 BPHYT_RS02765: BPHYT_RS02765 - cytochrome BD oxidase subunit I, at 621,058 to 622,650 _RS02765 BPHYT_RS02770: BPHYT_RS02770 - membrane protein, at 622,640 to 622,900 _RS02770 BPHYT_RS02775: BPHYT_RS02775 - RNA polymerase sigma 70, at 623,239 to 624,174 _RS02775
Group Condition BPHYT_RS02755 BPHYT_RS02760 BPHYT_RS02765 BPHYT_RS02770 BPHYT_RS02775
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.2 -0.4 -4.9 +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.2 -1.4 -1.5 -0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.6 -2.0 -2.4 +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.4 -0.5 -1.4 -1.0 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.0 -1.9 -1.7 -1.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.2 -1.6 -2.0 -0.3 N.D.
phage 36hr PHYTO11 MOI 0.1 -1.2 -2.0 -1.4 -0.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -3.1 -1.3 -0.2 -0.4 N.D.
lb_nosalt LB_noSalt -1.4 -0.8 -2.1 -0.4 N.D.
carbon source D-Glucose (C) -1.2 -1.5 -0.9 -1.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.7 -1.8 +0.5 +0.9 N.D.
phage 24hr PHYTO3 MOI 1 -0.3 -2.0 -2.3 +0.8 N.D.
phage 24hr PHYTO10 MOI 10 -0.2 -1.9 -2.1 +0.5 N.D.
phage 36hr PHYTO1 MOI 1 -0.0 -1.9 -2.2 +0.5 N.D.
phage 36hr PHYTO10 MOI 1 +0.5 -2.0 -2.3 +0.3 N.D.
phage 36hr PHYTO7 MOI 0.1 -1.6 -0.1 -2.4 +0.7 N.D.
nophagecontrol 36hr Phyto Lib only +0.1 -1.8 -2.1 +0.5 N.D.
phage 36hr PHYTO11 MOI 0.1 -0.8 -0.8 -2.2 +0.7 N.D.
phage 36hr PHYTO11 MOI 1 -1.2 -1.9 +1.0 -0.3 N.D.
supernatant control Vogels_fungal_media 0.1X +1.3 -1.8 -0.7 -1.0 N.D.
supernatant control Vogels_fungal_media; pH 5.5 +1.7 +0.0 -2.3 -0.7 N.D.
phage P. phyto PHYTO2 MOI 1 +1.0 -0.9 -1.7 +1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3 +1.4 -2.3 +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.4 +0.4 +2.6 +1.9 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +1.7 +1.8 +1.8 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.0 +1.2 +0.7 +2.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.9 +1.3 +1.8 +0.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +2.0 +1.5 +1.5 +1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.6 +1.6 +0.9 +1.9 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +2.9 +1.1 +2.0 +2.3 N.D.
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