Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS02445	BPHYT_RS02450	BPHYT_RS02455	BPHYT_RS02460	BPHYT_RS02465
phage	24hr PHYTO3 MOI 10	N.D.	N.D.	-0.6	+0.0	-0.4
phage	24hr PHYTO1 MOI 1	N.D.	N.D.	-0.3	-0.3	-0.3
phage	24hr PHYTO9 MOI 10	N.D.	N.D.	-0.1	-0.4	-0.4
phage	24hr PHYTO2 MOI 1	N.D.	N.D.	-0.6	-0.4	+0.1
carbon source	Suberic (C)	N.D.	N.D.	-0.2	-0.2	-0.4
phage	24hr PHYTO6 MOI 10	N.D.	N.D.	-0.3	+0.2	-0.6
nitrogen source	L-Lysine (N)	N.D.	N.D.	-0.3	-0.5	+0.1
phage	P. phyto PHYTO2 MOI 1	N.D.	N.D.	+0.2	-0.5	-0.3
phage	36hr PHYTO MOI 0.1	N.D.	N.D.	-0.6	+0.2	-0.0
carbon source	L-Glutamine (C)	N.D.	N.D.	-0.1	+0.2	-0.5
phage	24hr PHYTO10 MOI 1	N.D.	N.D.	+0.3	-0.3	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-0.1	+0.3	-0.4
phage	24hr PHYTO8 MOI 1	N.D.	N.D.	-0.5	+0.1	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.4	+0.1	+0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	N.D.	-0.1	-0.3	+0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	N.D.	-0.1	-0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.2	+0.3	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	N.D.	+0.3	-0.3	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.4	-0.2	+0.2
nitrogen source	L-Serine (N)	N.D.	N.D.	-0.2	-0.0	+0.6
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	N.D.	N.D.	+0.4	+0.3	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.5	+0.2	-0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	N.D.	N.D.	+0.7	-0.0	-0.0
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	N.D.	N.D.	-0.2	+0.2	+0.7
tn7 efficiency	Outgrowth after Tn7 transformation	N.D.	N.D.	+0.5	+0.2	+0.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	N.D.	N.D.	+0.1	+0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.6	+0.2	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	N.D.	+0.2	+0.2	+0.4
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	N.D.	+0.2	+0.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.1	+0.3	+0.9