Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS02425 and BPHYT_RS02430 are separated by 16 nucleotidesBPHYT_RS02430 and BPHYT_RS02435 are separated by 98 nucleotidesBPHYT_RS02435 and BPHYT_RS02440 are separated by 198 nucleotidesBPHYT_RS02440 and BPHYT_RS02445 are separated by 13 nucleotides BPHYT_RS02425: BPHYT_RS02425 - hypothetical protein, at 552,318 to 552,587 _RS02425 BPHYT_RS02430: BPHYT_RS02430 - XRE family transcriptional regulator, at 552,604 to 553,572 _RS02430 BPHYT_RS02435: BPHYT_RS02435 - hypothetical protein, at 553,671 to 553,997 _RS02435 BPHYT_RS02440: BPHYT_RS02440 - octanoyltransferase, at 554,196 to 554,921 _RS02440 BPHYT_RS02445: BPHYT_RS02445 - lipoyl synthase, at 554,935 to 555,942 _RS02445
Group Condition BPHYT_RS02425 BPHYT_RS02430 BPHYT_RS02435 BPHYT_RS02440 BPHYT_RS02445
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.3 -0.2 -2.9 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.5 -0.0 -1.7 N.D. N.D.
nitrogen source L-Phenylalanine (N) -0.1 -0.1 -1.9 N.D. N.D.
nitrogen source Carnitine Hydrochloride (N) +0.0 -0.0 -2.0 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.4 -2.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.6 -1.3 N.D. N.D.
lb_dap plate control LB_DAP agar plate, outgrowth in LB +0.3 +0.1 -1.8 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 +0.2 -1.7 N.D. N.D.
carbon source Sebacic (C) +0.6 -0.0 -1.6 N.D. N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.6 -0.0 -1.5 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.7 -0.3 +1.2 N.D. N.D.
phage 36hr PHYTO1 MOI 1 -0.2 -0.7 +1.3 N.D. N.D.
phage 24hr PHYTO3 MOI 10 -0.2 -0.5 +1.3 N.D. N.D.
phage 24hr PHYTO3 MOI 10 -0.7 -0.4 +1.8 N.D. N.D.
phage 36hr PHYTO11 MOI 0.1 -0.3 -0.1 +1.5 N.D. N.D.
phage 24hr PHYTO MOI 0.1 -0.2 -0.3 +1.5 N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.4 +0.2 +1.4 N.D. N.D.
phage 24hr PHYTO10 MOI 10 -0.3 -0.2 +1.7 N.D. N.D.
nophagecontrol 36hr Phyto Lib only -0.3 +0.0 +1.6 N.D. N.D.
phage 36hr PHYTO3 MOI 1 +0.1 -0.3 +1.6 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 -0.1 +1.2 N.D. N.D.
phage 24hr PHYTO2 MOI 0.1 +0.3 -0.1 +1.6 N.D. N.D.
phage 36hr PHYTO2 MOI 1 +0.3 -0.1 +1.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 +0.3 +0.8 N.D. N.D.
phage 36hr PHYTO3 MOI 1 +0.5 -0.2 +1.5 N.D. N.D.
phage P. phyto corn MOI 1 +0.5 +0.3 +1.4 N.D. N.D.
phage 24hr PHYTO6 MOI 10 +0.3 -0.2 +2.1 N.D. N.D.
phage 36hr PHYTO10 MOI 10 +0.7 +0.1 +1.4 N.D. N.D.
phage 36hr PHYTO2 MOI 1 +0.5 -0.2 +2.0 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +0.4 +1.8 N.D. N.D.
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BPHYT_RS02425
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BPHYT_RS02430
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BPHYT_RS02445
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