Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS02335	BPHYT_RS02340	BPHYT_RS02345	BPHYT_RS02350	BPHYT_RS02355
carbon source	D-Lactate (C)	-0.4	-0.4	-0.2	N.D.	N.D.
carbon source	D-Glucose (C)	-0.4	-0.2	-0.3	N.D.	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.0	+0.0	-0.8	N.D.	N.D.
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.4	+0.2	-0.5	N.D.	N.D.
supernatant control	Vogels_fungal_media 0.1X	+0.2	-0.2	-0.5	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.5	+0.6	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.7	-0.1	-0.3	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.3	+0.3	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.5	+0.2	N.D.	N.D.
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.1	+0.1	+0.6	N.D.	N.D.
phage	24hr PHYTO3 MOI 10	-0.2	+0.4	+0.3	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.2	+0.6	N.D.	N.D.
motility	outer cut, LB soft agar motility assay	+0.3	-0.1	+0.5	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.3	+0.3	N.D.	N.D.
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	+0.1	-0.0	+0.7	N.D.	N.D.
carbon source	adipate (C)	+0.1	+0.0	+0.7	N.D.	N.D.
carbon source	m-Inositol (C)	+0.2	+0.3	+0.4	N.D.	N.D.
carbon source	L-Fucose (C)	+0.2	+0.2	+0.5	N.D.	N.D.
motility	inner cut, LB soft agar motility assay	+0.3	+0.2	+0.5	N.D.	N.D.
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.2	+0.0	+0.6	N.D.	N.D.
temperature	LB, 37C	+0.1	+0.3	+0.5	N.D.	N.D.
motility	inner cut, LB soft agar motility assay	+0.4	+0.3	+0.3	N.D.	N.D.
stress	Nickel (II) chloride 1 mM	+0.2	+0.2	+0.5	N.D.	N.D.
carbon source	D-Glucose (C)	+0.4	+0.1	+0.5	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.5	+0.3	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.1	+0.7	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	+0.1	+0.3	N.D.	N.D.
carbon source	Suberic (C)	+0.2	+0.3	+0.7	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.1	+0.2	-0.0	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.4	+0.6	N.D.	N.D.