Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS02330 and BPHYT_RS02335 are separated by 128 nucleotidesBPHYT_RS02335 and BPHYT_RS02340 are separated by 253 nucleotidesBPHYT_RS02340 and BPHYT_RS02345 are separated by 49 nucleotidesBPHYT_RS02345 and BPHYT_RS02350 are separated by 97 nucleotides BPHYT_RS02330: BPHYT_RS02330 - IclR family transcriptional regulator, at 534,240 to 535,142 _RS02330 BPHYT_RS02335: BPHYT_RS02335 - fumarylacetoacetate hydrolase, at 535,271 to 536,254 _RS02335 BPHYT_RS02340: BPHYT_RS02340 - branched-chain amino acid ABC transporter substrate-binding protein, at 536,508 to 537,743 _RS02340 BPHYT_RS02345: BPHYT_RS02345 - enoyl-CoA hydratase, at 537,793 to 538,680 _RS02345 BPHYT_RS02350: BPHYT_RS02350 - hypothetical protein, at 538,778 to 539,599 _RS02350
Group Condition BPHYT_RS02330 BPHYT_RS02335 BPHYT_RS02340 BPHYT_RS02345 BPHYT_RS02350
carbon source 2-Deoxy-D-ribonic lithium salt (C) -2.0 -0.4 +0.2 -0.5 N.D.
vitamin With vitamins t2 -0.9 -0.4 -0.1 -0.3 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -1.5 +0.2 -0.2 -0.1 N.D.
vitamin With vitamins t1 -0.6 -0.3 -0.1 -0.3 N.D.
nitrogen source L-Lysine (N) -0.9 -0.3 +0.1 -0.2 N.D.
phage 36hr PHYTO3 MOI 1 -1.2 +0.0 -0.0 +0.1 N.D.
carbon source L-Glutamine (C) -0.9 -0.3 -0.0 +0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.1 +0.1 +0.0 +0.1 N.D.
phage 36hr PHYTO7 MOI 1 -0.9 -0.1 +0.3 +0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 +0.3 +0.3 +0.1 N.D.
phage 24hr PHYTO10 MOI 10 -0.9 -0.0 +0.1 +0.3 N.D.
carbon source Xylitol (C) -1.1 +0.2 +0.2 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 +0.1 +0.1 +0.4 N.D.
phage PHYTO3 MOI 0.1 -0.9 +0.1 +0.3 +0.3 N.D.
carbon source Azelaic (C) -0.9 +0.4 +0.3 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 +0.7 -0.1 -0.3 N.D.
supernatant control Vogels_fungal_media 0.1X +0.4 +0.2 -0.2 -0.5 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.7 +0.0 +0.3 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.2 +0.3 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.2 -0.5 +0.6 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +0.3 -0.2 +0.6 N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.4 +0.2 +0.0 +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +0.2 +0.5 +0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +1.1 +0.2 -0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +0.3 +0.1 +0.7 N.D.
phage 36hr PHYTO4 MOI 1 +0.8 -0.2 +0.2 +0.1 N.D.
phage 24hr PHYTO3 MOI 10 +0.5 -0.2 +0.4 +0.3 N.D.
phage 24hr PHYTO2 MOI 0.1 +0.6 +0.1 +0.3 +0.2 N.D.
phage 24hr PHYTO2 MOI 0.1 +0.5 +0.2 +0.3 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +0.4 +0.4 +0.6 N.D.
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