Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS02310	BPHYT_RS02315	BPHYT_RS02320	BPHYT_RS02325	BPHYT_RS02330
carbon source	L-Glutamine (C)	-1.9	+0.1	+0.1	+0.0	-0.9
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.1	-0.6	-0.1	-0.4	-1.5
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.1	-0.0	-0.2	-0.1	-2.0
nitrogen source	L-Lysine (N)	-0.4	-0.4	-0.3	-0.1	-0.9
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-1.0	-0.4	-0.0	-0.1	-0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.5	+0.2	+0.1	-0.4	-1.1
nitrogen source	L-Glutamic (N)	-1.6	-0.4	+0.2	-0.0	+0.1
phage	36hr PHYTO3 MOI 1	-0.3	-0.3	+0.0	+0.2	-1.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.8	-0.0	+0.3	-0.4	-0.4
phage	36hr PHYTO2 MOI 1	-0.2	-0.8	+0.2	+0.5	-0.9
carbon source	Tween 20 (C)	-0.7	-0.2	+0.4	-0.2	-0.5
carbon source	L-Asparagine (C)	-1.0	-0.0	+0.2	+0.1	-0.4
nitrogen source	L-Asparagine (N)	-1.3	+0.1	+0.1	-0.1	+0.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.8	+0.1	+0.2	-0.2	-0.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.6	-0.4	-0.0	+0.5	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.6	+0.1	-0.1	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.1	+0.5	-0.1	-0.1	-0.9
carbon source	Xylitol (C)	-0.2	+0.5	+0.0	+0.1	-1.1
carbon source	D-Galacturonic Acid (C)	-1.1	+0.0	-0.0	+0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.2	+0.6	-0.1	+0.2	-0.9
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.4	-0.0	+0.1	+0.5	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.1	+0.5	+0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.2	+0.4	+0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.0	+0.4	+0.3	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.8	+0.4	+0.1	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.1	+0.7	+0.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.5	+0.6	+0.4	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	+0.1	+0.3	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.4	+0.4	+0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.4	+0.8	+0.3	+0.2