Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS02305	BPHYT_RS02310	BPHYT_RS02315	BPHYT_RS02320	BPHYT_RS02325
nitrogen source	L-Glutamic (N)	-1.8	-1.6	-0.4	+0.2	-0.0
carbon source	L-Glutamine (C)	-1.9	-1.9	+0.1	+0.1	+0.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-1.1	-1.0	-0.4	-0.0	-0.1
nitrogen source	L-Glutamine (N)	-1.3	-1.4	+0.0	+0.0	+0.0
nitrogen source	L-Asparagine (N)	-1.5	-1.3	+0.1	+0.1	-0.1
nutrient	L-Histidine	-1.2	-1.0	+0.1	+0.1	-0.1
carbon source	D-Galacturonic Acid (C)	-1.0	-1.1	+0.0	-0.0	+0.2
supernatant control	Vogels_fungal_media 0.1X	-0.7	-1.0	-0.1	-0.0	-0.2
carbon source	succinate (C)	-0.6	-0.9	-0.3	-0.0	+0.1
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.6	+0.1	-0.6	-0.1	-0.4
carbon source	L-Histidine (C)	-0.7	-1.0	+0.0	+0.1	+0.0
nutrient	L-Histidine	-0.8	-0.9	-0.0	+0.1	+0.1
carbon source	L-Asparagine (C)	-0.8	-1.0	-0.0	+0.2	+0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.8	-0.0	+0.3	-0.4
carbon source	Gly-Glu (C)	-0.8	-0.6	+0.1	+0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	-0.4	-0.3	+0.3	-0.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.7	-0.6	-0.4	-0.0	+0.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.8	+0.1	+0.2	-0.2
carbon source	L-Malic (C)	-0.7	-0.8	+0.1	+0.2	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.5	-0.1	+0.4	-0.4	-0.3
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.5	-0.8	-0.1	+0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	-0.6	+0.1	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	-0.5	+0.2	+0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.5	+0.1	+0.5	+0.1
phage	36hr PHYTO2 MOI 1	+0.2	-0.2	-0.8	+0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.3	+0.1	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	-0.3	+0.4	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	-0.4	+0.4	+0.8	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	-0.6	+0.5	+0.6	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.4	+0.8	+0.4	+0.1