Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS02280 and BPHYT_RS02285 are separated by 172 nucleotidesBPHYT_RS02285 and BPHYT_RS02290 are separated by 61 nucleotidesBPHYT_RS02290 and BPHYT_RS02295 are separated by 442 nucleotidesBPHYT_RS02295 and BPHYT_RS02300 are separated by 142 nucleotides BPHYT_RS02280: BPHYT_RS02280 - DSBA oxidoreductase, at 522,374 to 523,012 _RS02280 BPHYT_RS02285: BPHYT_RS02285 - cell division protein, at 523,185 to 524,009 _RS02285 BPHYT_RS02290: BPHYT_RS02290 - arginine--tRNA ligase, at 524,071 to 525,861 _RS02290 BPHYT_RS02295: BPHYT_RS02295 - hypothetical protein, at 526,304 to 526,630 _RS02295 BPHYT_RS02300: BPHYT_RS02300 - acid shock protein, at 526,773 to 526,982 _RS02300
Group Condition BPHYT_RS02280 BPHYT_RS02285 BPHYT_RS02290 BPHYT_RS02295 BPHYT_RS02300
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. -4.7 N.D. +0.5 -0.5
nitrogen source D-Alanine (N) N.D. -4.7 N.D. +0.1 -0.1
phage 24hr PHYTO2 MOI 1 N.D. -1.1 N.D. -0.7 -2.7
phage 24hr PHYTO3 MOI 1 N.D. -1.9 N.D. -0.8 -1.5
phage 36hr PHYTO11 MOI 0.1 N.D. -1.7 N.D. -0.4 -1.8
phage 36hr PHYTO3 MOI 0.1 N.D. -2.0 N.D. -0.5 -1.2
phage 24hr PHYTO9 MOI 10 N.D. -1.2 N.D. -0.3 -2.1
phage 36hr PHYTO8 MOI 10 N.D. -1.1 N.D. -0.6 -1.7
phage 36hr PHYTO10 MOI 1 N.D. -1.5 N.D. -0.7 -1.1
phage 24hr PHYTO6 MOI 0.1 N.D. -1.2 N.D. -0.5 -1.5
phage 24hr PHYTO1 MOI 1 N.D. -1.7 N.D. -0.4 -0.9
motility inner cut, LB soft agar motility assay N.D. -2.0 N.D. +0.3 -1.2
phage 36hr PHYTO3 MOI 1 N.D. -2.2 N.D. -0.4 -0.3
phage 36hr PHYTO10 MOI 10 N.D. -1.2 N.D. -0.5 -1.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.9 N.D. +0.4 -2.1
motility outer cut, LB soft agar motility assay N.D. -2.1 N.D. +0.6 -1.2
motility outer cut, LB soft agar motility assay N.D. -2.6 N.D. -0.1 +0.2
motility outer cut, LB soft agar motility assay N.D. -2.1 N.D. +0.2 -0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -1.2 N.D. +0.6 -1.7
phage 24hr PHYTO10 MOI 1 N.D. -2.0 N.D. -0.5 +0.4
pH LB, pH4 N.D. -3.1 N.D. +0.7 +0.4
stress A22 0.005 mg/ml N.D. -2.0 N.D. +0.5 -0.4
pH LB, pH4 N.D. -2.4 N.D. +0.7 -0.2
motility inner cut, LB soft agar motility assay N.D. -2.3 N.D. +0.5 -0.1
nitrogen source L-Glutamine (N) N.D. -2.3 N.D. -0.2 +0.6
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.8 N.D. +0.5 -1.5
stress Lomefloxacin 0.001 mM N.D. -2.2 N.D. +0.4 +0.2
phage 36hr PHYTO2 MOI 1 N.D. -2.3 N.D. -0.3 +1.1
nitrogen source L-Citrulline (N) N.D. -1.8 N.D. -0.3 +0.7
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. -2.1 N.D. -0.0 +0.7
remove
BPHYT_RS02280
plot		 remove
BPHYT_RS02285
plot		 remove
BPHYT_RS02290		 remove
BPHYT_RS02295
plot		 remove
BPHYT_RS02300
plot