Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS02075	BPHYT_RS02080	BPHYT_RS02085	BPHYT_RS02090	BPHYT_RS02095
r2a control	R2A control	-0.1	-0.5	-0.2	-0.4	-0.3
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.2	-0.0	-0.3	-0.2	-0.4
phage	36hr PHYTO8 MOI 10	-0.1	-0.5	+0.1	-0.2	-0.5
phage	36hr PHYTO8 MOI 10	+0.1	-0.0	-0.4	+0.0	-0.6
phage	P. phyto PHYTO2 MOI 1	-0.1	-0.6	-0.1	+0.3	-0.3
phage	24hr PHYTO9 MOI 10	-0.0	+0.2	-0.1	-0.3	-0.4
phage	36hr PHYTO10 MOI 10	+0.0	+0.3	-0.3	+0.1	-0.7
nophagecontrol	36hr Phyto Lib only	-0.0	-0.6	+0.2	+0.1	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.1	+0.1	-0.1	-0.6
phage	24hr PHYTO3 MOI 10	+0.2	+0.1	-0.2	+0.1	-0.5
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	-0.0	-0.6	+0.1	-0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.2	-0.4	+0.1	-0.4	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.4	-0.3	-0.0	-0.4	+0.4
carbon source	Tween 20 (C)	+0.0	+0.4	+0.1	+0.1	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	-0.4	+0.2	+0.3	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-0.5	+0.2	+0.2	+0.4
motility	outer cut, LB soft agar motility assay	+0.3	+0.3	+0.1	-0.5	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.1	+0.3	+0.2	+0.3	-0.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.2	-0.4	-0.1	+0.1	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.5	+0.3	-0.1	-0.2
supernatant control	Vogels_fungal_media 0.1X	+0.1	-0.1	+0.3	+0.3	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.1	+0.5	+0.3	+0.2
nutrient	L-Histidine	+0.1	+0.5	+0.1	+0.3	+0.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.3	+0.6	+0.2	-0.2	+0.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.4	+0.2	+0.0	+0.2	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.0	+0.1	+0.4	+0.1	+0.6
supernatant control	Vogels_fungal_media 0.1X	+0.2	+0.4	+0.1	+0.2	+0.4
supernatant control	Vogels_fungal_media; pH 5.5	+0.2	+0.7	+0.0	+0.2	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.1	+0.1	+0.2	+0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.2	+0.4	+0.2	+0.4