Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS02035 and BPHYT_RS02040 are separated by 80 nucleotidesBPHYT_RS02040 and BPHYT_RS02045 are separated by 121 nucleotidesBPHYT_RS02045 and BPHYT_RS02050 overlap by 4 nucleotidesBPHYT_RS02050 and BPHYT_RS02055 overlap by 4 nucleotides BPHYT_RS02035: BPHYT_RS02035 - hypothetical protein, at 466,452 to 466,697 _RS02035 BPHYT_RS02040: BPHYT_RS02040 - hypothetical protein, at 466,778 to 467,008 _RS02040 BPHYT_RS02045: BPHYT_RS02045 - Fructokinase (EC 2.7.1.4) (from data), at 467,130 to 468,047 _RS02045 BPHYT_RS02050: BPHYT_RS02050 - D-mannose isomerase (EC 5.3.1.7) (from data), at 468,044 to 469,327 _RS02050 BPHYT_RS02055: BPHYT_RS02055 - LacI family transcription regulator, at 469,324 to 470,310 _RS02055
Group Condition BPHYT_RS02035 BPHYT_RS02040 BPHYT_RS02045 BPHYT_RS02050 BPHYT_RS02055
carbon source D-Mannose (C) -0.0 -0.1 -6.8 -5.4 N.D.
carbon source D-Sorbitol (C) +0.1 +0.3 -7.6 -2.9 N.D.
carbon source D-Fructose (C) +0.1 +0.3 -5.1 -3.1 N.D.
carbon source D-Fructose (C) -0.1 +0.2 -4.6 -2.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -1.0 -4.1 -1.2 N.D.
carbon source D-Fructose (C) +0.6 +0.3 -4.6 -2.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days +0.4 +0.1 -4.8 -1.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -0.5 -3.8 -1.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 -0.7 -3.5 -1.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -0.5 -3.1 -1.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -0.4 -3.4 -0.8 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.2 -3.4 -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.1 -3.4 -1.1 N.D.
carbon source D-Fructose (C) -0.3 -0.1 -2.4 -1.2 N.D.
carbon source D-Fructose (C) -0.0 -0.3 -2.0 -1.3 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.0 -3.6 -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 -0.3 -2.5 -1.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.1 -0.6 -2.4 -1.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.7 -0.3 -2.3 -1.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 -0.7 -2.0 -0.4 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.2 -0.8 -2.0 -0.4 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 +0.0 -1.7 -1.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 -0.3 -1.6 -0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 -1.5 -1.0 +0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 -0.7 -1.5 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.9 -0.7 -1.0 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 +0.6 -1.6 +0.5 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +1.0 +0.3 -1.5 -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -1.0 +1.4 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 +0.7 -0.6 +0.9 N.D.
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