Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS01940	BPHYT_RS01945	BPHYT_RS01950	BPHYT_RS01955	BPHYT_RS01960
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.6	-0.1	-2.1	-3.1	-2.7
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-1.0	-0.1	-0.9	-1.2	-0.8
motility	outer cut, LB soft agar motility assay	-0.1	-0.6	-1.1	-1.6	-0.7
motility	outer cut, LB soft agar motility assay	-0.3	+0.4	-1.9	-1.9	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.7	-0.0	-1.3	-1.2	-0.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.5	+1.0	-0.7	-1.3	-1.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.3	+0.3	-1.2	-0.7	-1.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.5	+0.3	-1.5	-0.8	-0.8
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.7	-0.3	-0.4	-1.1	-0.9
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.9	-1.3	+0.0	-0.7	-0.4
motility	inner cut, LB soft agar motility assay	-0.4	-0.8	-1.0	-1.5	+0.4
phage	36hr PHYTO2 MOI 1	-0.3	-1.1	-1.4	-0.9	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.2	-0.7	-0.4	-1.2	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	+0.2	-0.1	-1.3	-1.0
motility	inner cut, LB soft agar motility assay	-0.7	-0.7	-1.0	-0.6	+0.4
phage	24hr PHYTO2 MOI 1	-0.5	-1.6	-0.4	-0.3	+0.6
nophagecontrol	36hr Phyto Lib only	+0.5	-1.1	-1.3	-0.8	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	+0.7	-0.2	-1.2	-0.7
nitrogen source	L-Glutamic (N)	-0.1	-0.0	+0.8	-1.3	-1.3
phage	36hr PHYTO11 MOI 1	-0.1	+0.0	-2.0	-0.7	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.0	+0.9	-0.5	-0.7	-0.3
phage	36hr PHYTO3 MOI 1	+0.5	-0.4	-1.6	-0.6	+0.7
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.3	+1.3	-1.0	-0.5	-0.8
phage	36hr PHYTO1 MOI 1	+0.2	+0.1	-1.6	-0.5	+1.0
phage	24hr PHYTO4 MOI 10	+0.4	+1.0	-2.0	-0.6	+0.5
phage	36hr PHYTO11 MOI 1	+0.6	+0.2	-1.9	-0.2	+0.7
phage	36hr PHYTO10 MOI 10	+0.6	-0.9	-0.8	-0.4	+1.0
phage	36hr PHYTO8 MOI 10	+0.0	+0.8	-0.8	-0.6	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	+0.6	+0.9	+0.3	+0.9
carbon source	D-Glucose (C)	-0.3	+0.8	+0.9	+1.0	+1.0