Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS01910	BPHYT_RS01915	BPHYT_RS01920	BPHYT_RS01925	BPHYT_RS01930
carbon source	L-Phenylalanine (C)	N.D.	-0.1	-6.7	-0.0	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	-0.2	-1.0	-0.3	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	-0.3	-1.0	-0.1	-0.6
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	-0.3	-0.5	-0.4	-0.6
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	-1.1	+0.0	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	-1.4	-0.4	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	-0.1	-1.3	+0.2	-0.3
nitrogen source	L-Phenylalanine (N)	N.D.	+0.2	-1.7	-0.1	+0.2
carbon source	Phenylacetic 5 mM (C)	N.D.	-0.1	-0.8	+0.1	-0.6
carbon source	Phenylacetic 5 mM (C)	N.D.	+0.0	-1.0	-0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.3	-1.2	+0.0	+0.1
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.3	-0.9	+0.2	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	-0.0	-1.0	+0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	-1.2	-0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.3	-1.2	-0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.1	-0.9	-0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	-0.9	-0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	-0.8	-0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.3	-1.1	-0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	-0.9	-0.1	+0.5
phage	P. phyto PHYTO2 MOI 1	N.D.	-0.2	+0.4	+0.1	-0.9
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	+0.0	-0.9	+0.1	+0.4
phage	36hr PHYTO11 MOI 1	N.D.	-0.2	+0.6	-0.0	-0.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	+0.6	+0.2	-0.5
phage	36hr PHYTO4 MOI 1	N.D.	-0.1	+0.9	-0.2	-0.4
phage	36hr PHYTO8 MOI 10	N.D.	+0.1	+0.8	-0.0	-0.5
phage	24hr PHYTO4 MOI 10	N.D.	-0.0	+0.9	+0.1	-0.3
nitrogen source	L-Isoleucine (N)	N.D.	-0.0	+0.9	-0.3	+0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	-0.1	+1.5	+0.1	-0.6
carbon source	Malonic (C)	N.D.	+0.2	+0.7	-0.4	+0.6