Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS01860	BPHYT_RS01865	BPHYT_RS01870	BPHYT_RS01875	BPHYT_RS01880
carbon source	Suberic (C)	-0.5	+0.0	-0.5	-0.2	-0.5
phage	PHYTO3 MOI 0.1	-0.4	-0.2	+0.0	-0.7	-0.1
phage	24hr PHYTO2 MOI 1	-0.5	+0.0	-0.2	-0.5	-0.0
phage	24hr PHYTO6 MOI 0.1	-0.5	+0.0	-0.1	-0.6	-0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.8	-0.3	-0.2	-0.0	+0.1
carbon source	Sebacic (C)	-0.4	+0.2	-0.3	-0.5	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.1	+0.1	-0.3	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.0	+0.0	+0.3	-0.4	+0.0
carbon source	Protocatechuic Acid (C)	-0.4	-0.2	+0.2	-0.4	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.5	+0.1	-0.6	+0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.3	-0.2	-0.4	-0.1
phage	24hr PHYTO2 MOI 0.1	-0.4	+0.0	+0.3	-0.5	-0.1
nophagecontrol	36hr Phyto Lib Only	-0.3	+0.2	+0.2	-0.6	-0.1
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.5	-0.1	+0.4	-0.3	-0.1
phage	24hr PHYTO9 MOI 10	+0.2	+0.2	+0.0	-0.8	+0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.9	-0.0	+0.3	+0.2	+0.2
phage	36hr PHYTO6 MOI 10	-0.6	+0.4	+0.1	-0.0	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.0	-0.1	-0.7	+0.3
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.1	-0.2	+0.3	-0.5	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.4	+0.1	-0.2	-0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-0.1	-0.3	-0.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+0.1	+0.5	-0.6	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.1	+0.5	-0.6	+0.1
motility	inner cut, LB soft agar motility assay	-0.3	+0.1	-0.3	+0.7	+0.1
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.3	-0.2	+0.5	-0.3	+0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.2	+0.4	-0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.1	+0.6	-0.2	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.4	-0.2	+0.2	-0.1	+0.4
supernatant control	Vogels_fungal_media 0.1X	+0.3	+0.1	-0.1	+0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.0	+0.6	+0.5	+0.4