Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS01845	BPHYT_RS01850	BPHYT_RS01855	BPHYT_RS01860	BPHYT_RS01865
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	-0.3	-0.0	-0.8	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.2	+0.1	-1.0	+0.0
carbon source	L-Fucose (C)	N.D.	-0.5	+0.1	-0.4	-0.2
phage	36hr PHYTO9 MOI 0.1	N.D.	-0.2	+0.0	-0.8	-0.1
carbon source	Protocatechuic Acid (C)	N.D.	-0.1	-0.3	-0.5	-0.1
carbon source	Protocatechuic Acid (C)	N.D.	-0.2	-0.1	-0.4	-0.2
carbon source	Phenylacetic 5 mM (C)	N.D.	-0.5	-0.5	+0.3	-0.3
phage	PHYTO3 MOI 0.1	N.D.	-0.3	+0.0	-0.4	-0.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	N.D.	-0.1	+0.1	-0.9	-0.0
phage	P. phyto PHYTO2 MOI 1	N.D.	-0.4	-0.4	-0.2	+0.1
carbon source	D-Glucose 20 mM (C)	N.D.	-0.3	-0.4	+0.2	-0.2
nitrogen source	L-Lysine (N)	N.D.	-0.1	-0.2	-0.5	+0.1
phage	36hr PHYTO6 MOI 10	N.D.	-0.2	-0.2	-0.6	+0.4
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	N.D.	-0.3	-0.2	+0.2	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	+0.0	+0.2	-0.7	+0.1
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	-0.1	-0.5	-0.1	+0.3
carbon source	succinate (C)	N.D.	+0.4	-0.3	-0.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.1	+0.5	-0.4	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	+0.1	+0.4	-0.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	N.D.	+0.2	+0.3	-0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.3	-0.3	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	-0.0	+0.5	-0.5	+0.1
phage	36hr PHYTO1 MOI 1	N.D.	-0.3	+0.2	-0.2	+0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.3	-0.1	+0.3	-0.2
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.1	+0.4	-0.2	+0.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	N.D.	-0.1	-0.2	+0.5	+0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	+0.3	+0.4	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.5	+0.3	-0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.7	+0.4	-0.2	-0.0
nutrient	L-Histidine	N.D.	+0.0	+0.3	+0.3	+0.3